View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4885-Insertion-3 (Length: 822)

Name: NF4885-Insertion-3
Description: NF4885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4885-Insertion-3
NF4885-Insertion-3
[»] chr8 (7 HSPs)
chr8 (270-592)||(43147245-43147567)
chr8 (8-242)||(43147585-43147820)
chr8 (733-822)||(43147015-43147104)
chr8 (16-132)||(43159051-43159173)
chr8 (183-242)||(3507917-3507976)
chr8 (282-338)||(26947030-26947086)
chr8 (159-242)||(26946934-26947017)
[»] chr3 (3 HSPs)
chr3 (421-592)||(39362723-39362893)
chr3 (767-822)||(39362576-39362631)
chr3 (286-338)||(12074251-12074303)
[»] chr4 (3 HSPs)
chr4 (282-338)||(4892216-4892272)
chr4 (145-241)||(3640030-3640126)
chr4 (282-336)||(4872396-4872450)
[»] chr1 (1 HSPs)
chr1 (282-338)||(32238586-32238642)
[»] scaffold0989 (1 HSPs)
scaffold0989 (169-242)||(1119-1192)
[»] chr7 (1 HSPs)
chr7 (169-242)||(18790940-18791013)


Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-179; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 270 - 592
Target Start/End: Complemental strand, 43147567 - 43147245
Alignment:
Q  270 cattctacatgtttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttctagatcgtatcattacataatattttacacacttt 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43147567 cattctacatgtttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttctagatcgtatcattacataatattttacacacttt 43147468  T
Q  370 aagagagaattttacatacttctttgtcctgcatacatgtaatactatttaaatatggtgtatcattcaacttgattcatataggatattttgatgccgt 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43147467 aagagagaattttacatacttctttgtcctgcatacatgtaatactatttaaatatggtgtatcattcaacttgattcgtataggatattttgatgccgt 43147368  T
Q  470 ttcatctattttgccaaccttgcctagtttgctttcttcaaaaattgtttgacacaacttctcttaaggagtagaaaatgtcggcaataagctgggccaa 569  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43147367 ttcatctattttgccaaccttgcctagtttgctttcttcaaaaattgtttgacacaacttctcttaaggagtagaaaatgtcggcaataagctgggccaa 43147268  T
Q  570 acactcccataatgcactcaact 592  Q
    |||||||||||||||||||||||    
T  43147267 acactcccataatgcactcaact 43147245  T

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Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 43147820 - 43147585
Alignment:
Q  8 gaatgggcaatgaaaaaatggaactaggattcctcccaccatttaaaacactcgaccaaaaatgcaccaaagaataataaattagatcaatttgatctac 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43147820 gaatgggcaatgaaaaaatggaactaggattcctcccaccatttaaaacactcgaccaaaaatgcaccaaagaataataaattagatcaatttgatctac 43147721  T
Q  108 caac-accatgcttccaaagtgaggggaatattgttagaaaaggagaacgccatagtgagattttgtgaggaattgaggaggagataatgtatgatagaa 206  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43147720 caaccaccatgcttccaaagtgaggggaatattgttagaaaaggagaacgccatagtgagattttgtgaggaattgaggaggagataatgtatgatagaa 43147621  T
Q  207 gtacaatttctattgcttgagagaatgctttgattc 242  Q
    ||||||||||||||||||||||||||||||||||||    
T  43147620 gtacaatttctattgcttgagagaatgctttgattc 43147585  T

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Target: chr8; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 733 - 822
Target Start/End: Complemental strand, 43147104 - 43147015
Alignment:
Q  733 aacacaaaaatttggtaacacagttcagagtaaagttgacttctatgtaattttatacgtcttttctatatttgttttataataacttca 822  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43147104 aacacaaaaatttggtaacacagttcagagtaaagttgacttctatataattttatacgtcttttctatatttgttttataataacttca 43147015  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 16 - 132
Target Start/End: Complemental strand, 43159173 - 43159051
Alignment:
Q  16 aatgaaaaaatggaactaggattcctcccaccatttaaaacactcgaccaaa--------aatgcaccaaagaataataaattagatcaatttgatctac 107  Q
    |||||||||||||||||| ||||||||||||||| ||||||| || | |||         |||||||||||||||||   ||||||||||||||||||||    
T  43159173 aatgaaaaaatggaactaagattcctcccaccatctaaaacaatcaatcaatcaatcaagaatgcaccaaagaataa---attagatcaatttgatctac 43159077  T
Q  108 caaca-ccatgcttccaaagtgaggg 132  Q
    ||||| ||||||||||||||||||||    
T  43159076 caacacccatgcttccaaagtgaggg 43159051  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 183 - 242
Target Start/End: Complemental strand, 3507976 - 3507917
Alignment:
Q  183 aggaggagataatgtatgatagaagtacaatttctattgcttgagagaatgctttgattc 242  Q
    ||||||||||||| ||||| ||||| ||||||||||||||||||||||||  ||||||||    
T  3507976 aggaggagataatatatgagagaagaacaatttctattgcttgagagaataatttgattc 3507917  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 26947030 - 26947086
Alignment:
Q  282 ttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttctaga 338  Q
    ||||||||| |||||||||||||||||||| |||||| || ||| ||||||||||||    
T  26947030 ttgatttactaatgacaagctctcccctttttataggctccaagggagagttctaga 26947086  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 242
Target Start/End: Original strand, 26946934 - 26947017
Alignment:
Q  159 atagtgagattttgtgaggaattgaggaggagataatgtatgatagaagtacaatttctattgcttgagagaatgctttgattc 242  Q
    ||||||||| |||||||| |||| ||||||||  ||| | ||| ||||| || |||| |||| ||||||||||| |||||||||    
T  26946934 atagtgagactttgtgagaaatttaggaggagggaatatttgagagaagaactatttttattacttgagagaatactttgattc 26947017  T

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Target: chr3 (Bit Score: 136; Significance: 2e-70; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 421 - 592
Target Start/End: Complemental strand, 39362893 - 39362723
Alignment:
Q  421 aatatggtgtatcattcaacttgattcatataggatattttgatgccgtttcatctattttgccaaccttgcctagtttgctttcttcaaaaattgtttg 520  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||    
T  39362893 aatatggtgcatcattcaacttgattcatataggatattttgatgccgtttcatctattttgccaaccttgcctactgtgctttcttcaaaaattgtatg 39362794  T
Q  521 acacaacttctcttaaggagtagaaaatgtcggcaataagctgggccaaacactcccataatgcactcaact 592  Q
     |||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  39362793 gcacaacttctcttaaggactagaaaa-gtcagcaataagctgggccaaacactcccataatgcactcaact 39362723  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 767 - 822
Target Start/End: Complemental strand, 39362631 - 39362576
Alignment:
Q  767 gttgacttctatgtaattttatacgtcttttctatatttgttttataataacttca 822  Q
    |||||||||||| || ||||| ||||||||||||||||||||| || |||||||||    
T  39362631 gttgacttctatttagttttacacgtcttttctatatttgtttcatgataacttca 39362576  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 286 - 338
Target Start/End: Complemental strand, 12074303 - 12074251
Alignment:
Q  286 tttacaaatgacaagctctcccctttgtataggttctaagagagagttctaga 338  Q
    |||||||||||||||||||||| ||| |||||| |  ||||||||||||||||    
T  12074303 tttacaaatgacaagctctcccatttttataggcttcaagagagagttctaga 12074251  T

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Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 282 - 338
Target Start/End: Original strand, 4892216 - 4892272
Alignment:
Q  282 ttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttctaga 338  Q
    |||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||    
T  4892216 ttgatttacaaatgacaagctctcccctttttataggctctaagggagagttctaga 4892272  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 145 - 241
Target Start/End: Complemental strand, 3640126 - 3640030
Alignment:
Q  145 aaaaggagaacgccatagtgagattttgtgaggaattgaggaggagataatgtatgatagaagtacaatttctattgcttgagagaatgctttgatt 241  Q
    ||||||||||||  |||||||| ||||| ||| |||||||||||||| ||| |   | ||||| |||||||||||| | ||||||||||||||||||    
T  3640126 aaaaggagaacgttatagtgagcttttgggagaaattgaggaggagagaatattaaagagaaggacaatttctattccgtgagagaatgctttgatt 3640030  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 282 - 336
Target Start/End: Original strand, 4872396 - 4872450
Alignment:
Q  282 ttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttcta 336  Q
    |||||||||||||||||||||||||||||| |||||| || ||| ||||||||||    
T  4872396 ttgatttacaaatgacaagctctcccctttttataggctccaagggagagttcta 4872450  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 32238642 - 32238586
Alignment:
Q  282 ttgatttacaaatgacaagctctcccctttgtataggttctaagagagagttctaga 338  Q
    |||||||||||||||||||||||||||||| |||||| || ||| ||||||||||||    
T  32238642 ttgatttacaaatgacaagctctcccctttttataggctccaagggagagttctaga 32238586  T

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Target: scaffold0989 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 1119 - 1192
Alignment:
Q  169 tttgtgaggaattgaggaggagataatgtatgatagaagtacaatttctattgcttgagagaatgctttgattc 242  Q
    ||||||||||||| |||| |||| ||| | ||| ||||  |||||||||||| |||||||| || |||||||||    
T  1119 tttgtgaggaatttaggatgagagaatatttgagagaataacaatttctatttcttgagaggatactttgattc 1192  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 18790940 - 18791013
Alignment:
Q  169 tttgtgaggaattgaggaggagataatgtatgatagaagtacaatttctattgcttgagagaatgctttgattc 242  Q
    |||||||| |||| |||||||||||||   ||| ||||| || ||||||||| |||||||| || |||||||||    
T  18790940 tttgtgagaaatttaggaggagataatacttgagagaagaactatttctattacttgagaggatactttgattc 18791013  T

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