View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4885-Insertion-4 (Length: 742)
Name: NF4885-Insertion-4
Description: NF4885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4885-Insertion-4 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 447 - 742
Target Start/End: Complemental strand, 27196941 - 27196646
Alignment:
| Q |
447 |
aatttaatacgcaatattaaatttcataagttggtataattacagttttgctactatgacgaatttggtttttaatttcaatctcaatttcaaatattat |
546 |
Q |
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| T |
27196941 |
aatttaatacgcaatattaaatttcatacgtgggtataattacagttttgctactatgacgaatttggtttttaatttcaatctcaatttcaaatattat |
27196842 |
T |
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| Q |
547 |
gcagctatggttgcagtagcaatcaatcgactgcttccagcttccccatttggaagcaatagctaagactataacaataaaggtaagaggaaggagaata |
646 |
Q |
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| T |
27196841 |
gcagctatggttgcagtagcaatcaatcgaatgcttccagcttccccatttggaagcaatagctaagactataacaataaaggtaagaggaaggagaata |
27196742 |
T |
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| Q |
647 |
accataatttttggcagggtgactcatgcacaagattaaatcacacattaaagattatcatccatatcacaatatctgaatattcaaattatttta |
742 |
Q |
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| T |
27196741 |
accataatttttggcagggtgactcatgcacaagattaaatcacacattaaagatgatcatccatatcacaatatccaaagattcaaattatttta |
27196646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 8e-91
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 27197533 - 27197283
Alignment:
| Q |
7 |
aaagagaagtttgtattgtgaaaatgagtaaggtagggccgcttaggtttgaagtgcgnnnnnnnntgaatttatgatgtttaaaatgcaaaaataagta |
106 |
Q |
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| T |
27197533 |
aaagagaagtttgtattgtgaaaatgagtaaggtagggccgcttaggtttgaagtgcgaaaaaaa-tgaatttatgatgtttaaaatgcaaaaataagta |
27197435 |
T |
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| Q |
107 |
caccctcaccaatttgtagatcatatannnnnnnattatggaaattaaatgtgttgaggttcaccaaagttaggatatagatcatcattatcaacgagat |
206 |
Q |
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| T |
27197434 |
caccctcaccaatttgtagttcttatgtttttttattatggaaattaaatgtgttggggctcaccaaagttagaatatagatcatcattatcaacgagat |
27197335 |
T |
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| Q |
207 |
cttaacgctaataacgatagctgaacccacactattgttaccacatatatgt |
258 |
Q |
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| T |
27197334 |
cttaacgctaataacgatagttgaacccacactattgctaccacatatatgt |
27197283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 304 - 436
Target Start/End: Complemental strand, 27197056 - 27196924
Alignment:
| Q |
304 |
gcttctccattcatagaagctttctcctctgtgtggtgtttttgcatttatgcttctctattcaaagatactttctcttgtgtgtggtgtttgatgaaaa |
403 |
Q |
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| T |
27197056 |
gcttctccattcatagaagttttctcctctgtgtggtgtttttgcatttatgcttctctattcatagatactttctcttgtgtgtggtgtttgatgaaaa |
27196957 |
T |
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| Q |
404 |
gaactcactaaagataatttaatacgcaatatt |
436 |
Q |
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| T |
27196956 |
gaacttactaaagataatttaatacgcaatatt |
27196924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 635 - 742
Target Start/End: Complemental strand, 27211795 - 27211688
Alignment:
| Q |
635 |
ggaaggagaataaccataatttttggcagggtgactcatgcacaagattaaatcacacattaaagattatcatccatatcacaatatctgaatattcaaa |
734 |
Q |
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| T |
27211795 |
ggaagtagaataaccataatttttggcatgttgactcatgcacaagattaaatcacacatcaaagattatcatccatatcacaatatctgaatattcaaa |
27211696 |
T |
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| Q |
735 |
ttatttta |
742 |
Q |
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| T |
27211695 |
ttatttta |
27211688 |
T |
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