View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4885-Insertion-5 (Length: 589)
Name: NF4885-Insertion-5
Description: NF4885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4885-Insertion-5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 6 - 589
Target Start/End: Original strand, 27889981 - 27890564
Alignment:
| Q |
6 |
catgttctttatctgctacatttattttcaaccttgcaactttttcttgaagtttagtgttatcttttgtctcagaattgaatttagttttccatgtagc |
105 |
Q |
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| T |
27889981 |
catgttctttatctgctacatttattttcaaccttgcaactttttcttgaagtttagtgttatcttttgtctcagaattgaatttagttttccatgtagc |
27890080 |
T |
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| Q |
106 |
agtttccttgtgtgacaagtgaagttgatcttgcaattgttgaatagtttcgtgtgacttacttgcttcatttttcaatgtagaaatttgcatctcaaaa |
205 |
Q |
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| T |
27890081 |
agtttccttgtgtgacaagtgaagttgatcttgcaattgttgaatagtttcatgtgacttacttgcttcatttttcaatgtagaaatttgcatctcaaaa |
27890180 |
T |
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| Q |
206 |
ttctcaactctttcttttgccattctaagctcatcttcaaagaatttaagatccatttcttcatttttcaccttaatatcttcttctaatgttgatggta |
305 |
Q |
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| T |
27890181 |
ttctcaactctctcttttgccattctaagctcatcttcaaagaatttaagatccatttcttcatttttcaccttaatatcttcttctaatattgatggta |
27890280 |
T |
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| Q |
306 |
attcattagtactgatagcgccgaggtcctgtatggattggccctgactcattccggaacaattacaatcatcgaaatgtgtcgatgattggttagactt |
405 |
Q |
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| T |
27890281 |
attcattagtactgatagtgccgaggtcctgtatggattggccctgactcattccggaacaattactatcatcgaaatgtgtcgatgattggttagactt |
27890380 |
T |
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| Q |
406 |
atatttttcaacctcaatcttaagtttattaatttcctcttctgaaagccttaacttttcattcacattcctcagttcttgttcatatgcattgattttg |
505 |
Q |
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| T |
27890381 |
atatttttcaacctcaatcttaagtttattaatttcctcttctgaaagccttaacttttcattcacattcctcagttcttgttcatatgcattgattttg |
27890480 |
T |
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| Q |
506 |
acaccaaaatcctcacaacgttcttgttcttgttgttcatacatgaaaatcttttctttcgcctcacgcaactcgatttccaat |
589 |
Q |
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| T |
27890481 |
acaccaaaatcctcacaatgttcttgttcttgttgttcatacatgaaaatcttttctttcgcctcacgcaactcgatttccaat |
27890564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 505
Target Start/End: Original strand, 32105067 - 32105146
Alignment:
| Q |
426 |
taagtttattaatttcctcttctgaaagccttaacttttcattcacattcctcagttcttgttcatatgcattgattttg |
505 |
Q |
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| T |
32105067 |
taagtttagtgatttcttcttctgaaagtcttaacttttcatttacaatcatcaattcttgttcgtatgcattaattttg |
32105146 |
T |
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