View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4885-Insertion-6 (Length: 585)

Name: NF4885-Insertion-6
Description: NF4885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4885-Insertion-6
NF4885-Insertion-6
[»] chr8 (11 HSPs)
chr8 (6-365)||(45547376-45547735)
chr8 (387-585)||(45531384-45531586)
chr8 (398-585)||(23136651-23136845)
chr8 (480-584)||(23160807-23160913)
chr8 (472-585)||(8351403-8351518)
chr8 (472-585)||(17890663-17890778)
chr8 (472-585)||(18667056-18667170)
chr8 (472-585)||(35136919-35137034)
chr8 (481-585)||(25064194-25064300)
chr8 (472-560)||(45250800-45250890)
chr8 (472-514)||(19742782-19742824)
[»] scaffold0059 (2 HSPs)
scaffold0059 (398-585)||(66931-67117)
scaffold0059 (398-585)||(75036-75222)
[»] chr3 (7 HSPs)
chr3 (398-585)||(20919454-20919640)
chr3 (398-585)||(20928416-20928602)
chr3 (476-585)||(37198063-37198172)
chr3 (472-585)||(2765791-2765906)
chr3 (398-457)||(37198007-37198069)
chr3 (472-585)||(20783815-20783930)
chr3 (472-585)||(50246371-50246486)
[»] chr6 (3 HSPs)
chr6 (398-585)||(1607714-1607903)
chr6 (418-585)||(11550470-11550639)
chr6 (424-585)||(4856646-4856809)
[»] chr2 (6 HSPs)
chr2 (398-585)||(41747554-41747746)
chr2 (472-585)||(16139518-16139633)
chr2 (472-585)||(20103739-20103854)
chr2 (472-585)||(21120084-21120198)
chr2 (472-557)||(24971948-24972035)
chr2 (402-459)||(16311472-16311529)
[»] chr5 (2 HSPs)
chr5 (418-585)||(9662778-9662947)
chr5 (472-559)||(27588856-27588945)
[»] chr4 (2 HSPs)
chr4 (398-460)||(35648158-35648220)
chr4 (472-585)||(14252977-14253092)
[»] scaffold0155 (1 HSPs)
scaffold0155 (472-585)||(26886-27000)
[»] chr1 (1 HSPs)
chr1 (472-585)||(45915205-45915319)
[»] scaffold0216 (2 HSPs)
scaffold0216 (472-574)||(18275-18379)
scaffold0216 (472-585)||(25465-25580)
[»] chr7 (1 HSPs)
chr7 (472-585)||(29494217-29494332)


Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 6 - 365
Target Start/End: Complemental strand, 45547735 - 45547376
Alignment:
Q  6 cagatgattgatagacataatcgtctcgcaaagaatttcagaaaagttcgtgatttagttgaacaaaatataacttctgatttttgtttgaggttgacga 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  45547735 cagatgattgatagacataatcgtctcgcaaagaatttcagaaaagttcgtgatttagttgaacaaaatgtaacatctgatttttgtttgaggttgacga 45547636  T
Q  106 gaaatcgttcaaaggatgctaggatgcacaacataccagaagttgatgaggtggcagctctaattgtcggagatactgacagtatagaatatggaagtga 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  45547635 gaaatcgttcaaaggatgctaggatgcacaacataccagaagttgatgaggtggcagctctaattgtcggagatactgacagtatagaatatggaagaga 45547536  T
Q  206 tattatcgttagaaaggaatcaggtcatttggaaagacttcatgagacacatacttcctttattccattacaatatcctttgatctttccttacggtgaa 305  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45547535 tattatcattagaaaggaatcaggtcatttggaaagacttcatgagacacatacttcctttattccattacaatatcctttgatctttccttacggtgaa 45547436  T
Q  306 gatggtttctctgaaaatattaaaataagtgaaaaggaggaagccaatccagaccgtact 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45547435 gatggtttctctgaaaatattaaaataagtgaaaaggaggaagccaatccagaccgtact 45547376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 387 - 585
Target Start/End: Complemental strand, 45531586 - 45531384
Alignment:
Q  387 ccatctctttatcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn----catagaagttt 482  Q
    |||||||||| |||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||             |||||||||||    
T  45531586 ccatctctttctcctccataaacaaattcataagagaaagtattttatgtgttttaaaagcatggaagttttttgtaaaaaaaaaaaaacatagaagttt 45531487  T
Q  483 aatcacttggttgtagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgt 582  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45531486 aatcacttggttgtagattatggagttgattttattttttgtgtatcttattgttaatcgttaattttactttctcatgatcccattgaagagcatgtgt 45531387  T
Q  583 cta 585  Q
    |||    
T  45531386 cta 45531384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 398 - 585
Target Start/End: Original strand, 23136651 - 23136845
Alignment:
Q  398 tcctccataaacaaattcataaaagaaa-----gtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn--catagaagtttaatcactt 490  Q
    |||||||||||||||||||||||| |||     |||| | ||||||||||||||||||||||||||||||           |||||||||||||||||||    
T  23136651 tcctccataaacaaattcataaaaaaaaaaaaagtatattctgtgttttaaaagcatggaagttttttgtaaacaaaacaacatagaagtttaatcactt 23136750  T
Q  491 ggttgtagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtcta 585  Q
    ||||||||||| ||| |||||||| |||||||||||||||||| |||||| ||||||| |||||||||| |||||||||||||||||||||||||    
T  23136751 ggttgtagattttggggttgattttattttttgtgtatcttattgttaattgttaattctactttctcaggatcccattgaagagcatgtgtcta 23136845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 480 - 584
Target Start/End: Complemental strand, 23160913 - 23160807
Alignment:
Q  480 tttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagca 577  Q
    |||||||| ||||||||||||||||| | |||||| ||||||  ||||||||| || ||| || | ||||| |||||||||| | | |||||| ||||||    
T  23160913 tttaatcaattggttgtagattatggggctgattttattttttatgtgtatctaattgtttattgctaattctactttctcaaggttccattggagagca 23160814  T
Q  578 tgtgtct 584  Q
    |||||||    
T  23160813 tgtgtct 23160807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 472 - 585
Target Start/End: Original strand, 8351403 - 8351518
Alignment:
Q  472 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 569  Q
    |||| ||| ||||||||||||||||||||||||  ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||||| | | |||||    
T  8351403 catataagattaatcacttggttgtagattatgaggttgattttcttttttatttgtatctaattgtttattgttaatgctactttctcaaggttccatt 8351502  T
Q  570 gaagagcatgtgtcta 585  Q
    | ||||||||||||||    
T  8351503 ggagagcatgtgtcta 8351518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 472 - 585
Target Start/End: Complemental strand, 17890778 - 17890663
Alignment:
Q  472 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 569  Q
    |||| ||| ||||||||||||||||||||||||| ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||| | | | |||||    
T  17890778 catataagattaatcacttggttgtagattatggggttgattttcttttttatttgtatctaattgtttattgttaatgctactttcttagggttccatt 17890679  T
Q  570 gaagagcatgtgtcta 585  Q
    | ||||||||||||||    
T  17890678 ggagagcatgtgtcta 17890663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 585
Target Start/End: Original strand, 18667056 - 18667170
Alignment:
Q  472 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 569  Q
    |||| ||||||||||| ||||||||||||||| | | ||||||  |||||  | ||||||| || |||||| ||| | | |||||||||| | |||||||    
T  18667056 cataaaagtttaatcatttggttgtagattatagggctgattttcttttttatttgtatctaattgttaattgttga-tgtactttctcagggtcccatt 18667154  T
Q  570 gaagagcatgtgtcta 585  Q
    | ||||||||||||||    
T  18667155 ggagagcatgtgtcta 18667170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 585
Target Start/End: Original strand, 35136919 - 35137034
Alignment:
Q  472 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 569  Q
    |||| ||| |||||||||||||||||||| |||| ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||||| | | |||||    
T  35136919 catataagattaatcacttggttgtagatcatggggttgattttcttttttatttgtatctaattgtttattgttaatgctactttctcagggttccatt 35137018  T
Q  570 gaagagcatgtgtcta 585  Q
    | |||||| |||||||    
T  35137019 ggagagcacgtgtcta 35137034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 585
Target Start/End: Original strand, 25064194 - 25064300
Alignment:
Q  481 ttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcat 578  Q
    ||||||||||||||||  ||||||| |||||||| ||||||  | ||||||| || ||| || ||||||  |||||| ||| | | |||||| |||||||    
T  25064194 ttaatcacttggttgtcaattatggggttgattttattttttatttgtatctaattgtttattgttaatgctactttatcagggttccattggagagcat 25064293  T
Q  579 gtgtcta 585  Q
    |||||||    
T  25064294 gtgtcta 25064300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 560
Target Start/End: Complemental strand, 45250890 - 45250800
Alignment:
Q  472 catagaagtttaatcacttggttgtagattatggagttgatttcatttttt--gtgtatcttatagttaatcgttaattttactttctcat 560  Q
    |||||||||||||||| ||||||||||||||| | ||||||||  ||||||   ||||||| || |||||| ||| ||  |||||||||||    
T  45250890 catagaagtttaatcatttggttgtagattatagggttgattttcttttttagttgtatctaattgttaattgttgatgctactttctcat 45250800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 514
Target Start/End: Original strand, 19742782 - 19742824
Alignment:
Q  472 catagaagtttaatcacttggttgtagattatggagttgattt 514  Q
    |||| ||| ||||||||||||||||||||||||| ||||||||    
T  19742782 catataagattaatcacttggttgtagattatggggttgattt 19742824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 128; Significance: 7e-66; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 398 - 585
Target Start/End: Complemental strand, 67117 - 66931
Alignment:
Q  398 tcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnncatagaagtttaatcacttggttgta 497  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||         ||| ||||||||||||||||||||||    
T  67117 tcctccataaacaaattcataaaagaaagtattttctgtgttttaaaagcatggaagttttttgtgaaaaaaa-catggaagtttaatcacttggttgta 67019  T
Q  498 gattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtcta 585  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  67018 gattatggagttaattttattttttgtgtatcttattgttaatcgttaattttactttctcaggatcccattgaagaggatgtgtcta 66931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 398 - 585
Target Start/End: Complemental strand, 75222 - 75036
Alignment:
Q  398 tcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnncatagaagtttaatcacttggttgta 497  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||         ||| ||||||||||||||||||||||    
T  75222 tcctccataaacaaattcataaaagaaagtattttctgtgttttaaaagcatggaagttttttgtgaaaaaaa-catggaagtttaatcacttggttgta 75124  T
Q  498 gattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtcta 585  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  75123 gattatggagttaattttattttttgtgtatcttattgttaatcgttaattttactttctcaggatcccattgaagaggatgtgtcta 75036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 7e-66; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 398 - 585
Target Start/End: Original strand, 20919454 - 20919640
Alignment:
Q  398 tcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnncatagaagtttaatcacttggttgta 497  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||         ||| ||||||||||||||||||||||    
T  20919454 tcctccataaacaaattcataaaagaaagtattttctgtgttttaaaagcatggaagttttttgtgaaaaaaa-catggaagtttaatcacttggttgta 20919552  T
Q  498 gattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtcta 585  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  20919553 gattatggagttaattttattttttgtgtatcttattgttaatcgttaattttactttctcaggatcccattgaagaggatgtgtcta 20919640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 398 - 585
Target Start/End: Original strand, 20928416 - 20928602
Alignment:
Q  398 tcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnncatagaagtttaatcacttggttgta 497  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||         ||| ||||||||||||||||||||||    
T  20928416 tcctccataaacaaattcataaaagaaagtattttctgtgttttaaaagcatggaagttttttgtgaaaaaaa-catggaagtttaatcacttggttgta 20928514  T
Q  498 gattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtcta 585  Q
    |||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  20928515 gattatggagttaattttattttttgtgtatcttattgttaatcgttaattttactttctcaggatcccattgaagaggatgtgtcta 20928602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 476 - 585
Target Start/End: Original strand, 37198063 - 37198172
Alignment:
Q  476 gaagtttaatcacttggttgtagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagag 575  Q
    |||||||||||||||||||||| ||||||  ||| |||| |||||||||||||||||| |||||| ||||||| |||||||||| || ||||||||||||    
T  37198063 gaagtttaatcacttggttgtatattatgaggtttattttattttttgtgtatcttattgttaattgttaattctactttctcaggaacccattgaagag 37198162  T
Q  576 catgtgtcta 585  Q
    ||||||||||    
T  37198163 catgtgtcta 37198172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 472 - 585
Target Start/End: Complemental strand, 2765906 - 2765791
Alignment:
Q  472 catagaagtttaatcacttggttgtagattatggagttgatttcattttttgt--gtatcttatagttaatcgttaattttactttctcatgatcccatt 569  Q
    |||||||||||||||| ||||||||| ||||| | ||||||||  |||||| |  |||||| || |||||| ||| ||| |||||||||| | |||||||    
T  2765906 catagaagtttaatcatttggttgtaaattatagggttgattttcttttttatttgtatctaattgttaattgttgattctactttctcagggtcccatt 2765807  T
Q  570 gaagagcatgtgtcta 585  Q
    | ||||||||||||||    
T  2765806 ggagagcatgtgtcta 2765791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 398 - 457
Target Start/End: Original strand, 37198007 - 37198069
Alignment:
Q  398 tcctccataaacaaattcataaaagaaa---gtatttcctgtgttttaaaagcatggaagttt 457  Q
    |||||||||||||||||||||||| |||   |||||| |||||||||||||||||||||||||    
T  37198007 tcctccataaacaaattcataaaaaaaaaaagtattttctgtgttttaaaagcatggaagttt 37198069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 585
Target Start/End: Complemental strand, 20783930 - 20783815
Alignment:
Q  472 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 569  Q
    |||| ||| ||||||||||||||||||||||||  ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||||| | |  ||||    
T  20783930 catataagattaatcacttggttgtagattatgaggttgattttcttttttatttgtatctaattgtttattgttaatgctactttctcagggtttcatt 20783831  T
Q  570 gaagagcatgtgtcta 585  Q
    | ||||||||||||||    
T  20783830 ggagagcatgtgtcta 20783815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 585
Target Start/End: Complemental strand, 50246486 - 50246371
Alignment:
Q  472 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 569  Q
    |||||||||||||||| || |||||| ||||| | ||||||||  |||||  | ||||||| || |||||| ||| ||  |||||||||| ||||| |||    
T  50246486 catagaagtttaatcatttagttgtaaattatagggttgattttcttttttatttgtatctaattgttaattgttgatgctactttctcaggatcctatt 50246387  T
Q  570 gaagagcatgtgtcta 585  Q
    | ||||||||| ||||    
T  50246386 ggagagcatgtttcta 50246371  T

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Target: chr6 (Bit Score: 124; Significance: 2e-63; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 398 - 585
Target Start/End: Complemental strand, 1607903 - 1607714
Alignment:
Q  398 tcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn--catagaagtttaatcacttggttg 495  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||           ||||||||||||||||||||||||    
T  1607903 tcctccataaacaaattcataaaaaaaagtattttctgtgttttaaaagcatggaagttttttgtaaacaaaaaaacatagaagtttaatcacttggttg 1607804  T
Q  496 tagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtcta 585  Q
    |||||||||| |||||||| |||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  1607803 tagattatggggttgattttattttttgtgtatcttattgttaatcgttaattctactttctcaggatcccattgaagagcatgtgtcta 1607714  T

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Target: chr6; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 418 - 585
Target Start/End: Original strand, 11550470 - 11550639
Alignment:
Q  418 aaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn--catagaagtttaatcacttggttgtagattatggagttgatttc 515  Q
    |||| ||||||| | ||||||||||||||||||||||||||||||           |||||||||||||||| ||||||||||||| ||| ||||||||     
T  11550470 aaaaaaaagtatattctgtgttttaaaagcatggaagttttttgttaaaaaaaaaacatagaagtttaatcatttggttgtagattttggggttgatttt 11550569  T
Q  516 attttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtcta 585  Q
    |||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| |||||||||||||    
T  11550570 attttttgtgtatcttattgttaatcgttaattctactttctcaggatcccattgaggagcatgtgtcta 11550639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 424 - 585
Target Start/End: Complemental strand, 4856809 - 4856646
Alignment:
Q  424 aagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn--catagaagtttaatcacttggttgtagattatggagttgatttcattttt 521  Q
    |||||| | ||||||||||||||||||||||||||||||           |||| ||||||||||| ||||||||||||| ||| |||||||| ||||||    
T  4856809 aagtatattctgtgttttaaaagcatggaagttttttgtaaacaaaaaaacataaaagtttaatcatttggttgtagattttggggttgattttattttt 4856710  T
Q  522 tgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtcta 585  Q
    |||||||||||| |||||||||||||| |||||||||| ||||||||||  |||||||||||||    
T  4856709 tgtgtatcttattgttaatcgttaattctactttctcaggatcccattgtggagcatgtgtcta 4856646  T

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Target: chr2 (Bit Score: 105; Significance: 4e-52; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 398 - 585
Target Start/End: Original strand, 41747554 - 41747746
Alignment:
Q  398 tcctccataaacaaattcataaaagaaa---gtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn--catagaagtttaatcacttgg 492  Q
    |||||||||||||||||||||||| |||   |||| | ||||||||||||||||||||||||||||||           |||||||||||||||||||||    
T  41747554 tcctccataaacaaattcataaaaaaaaaaagtatattctgtgttttaaaagcatggaagttttttgtaaacaaaaaaacatagaagtttaatcacttgg 41747653  T
Q  493 ttgtagattatggagttgatttcattttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtcta 585  Q
    ||||||||| ||| |||||||| |||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  41747654 ttgtagattttggggttgattttattttttgtgtatcttattgttaatcgttaattctactttctcaggatcccattgaagagcatgtgtcta 41747746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 472 - 585
Target Start/End: Original strand, 16139518 - 16139633
Alignment:
Q  472 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 569  Q
    |||| ||||||||||||||||||||||||||||||||||||||  |||||  | ||||||| || ||| || | ||||  |||||||||| | | |||||    
T  16139518 catataagtttaatcacttggttgtagattatggagttgattttcttttttatttgtatctaattgtttattgctaatgctactttctcagggttccatt 16139617  T
Q  570 gaagagcatgtgtcta 585  Q
    | |||| |||||||||    
T  16139618 ggagagtatgtgtcta 16139633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 472 - 585
Target Start/End: Original strand, 20103739 - 20103854
Alignment:
Q  472 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 569  Q
    |||| ||| ||||||||||||||||||||||||  ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||||| | | |||||    
T  20103739 catataagattaatcacttggttgtagattatgtggttgattttcttttttatttgtatctaattgtttattgttaatgctactttctcagggttccatt 20103838  T
Q  570 gaagagcatgtgtcta 585  Q
    | ||||||||||||||    
T  20103839 ggagagcatgtgtcta 20103854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 585
Target Start/End: Original strand, 21120084 - 21120198
Alignment:
Q  472 catagaagtttaatcacttggttgtagattatggagttgatttcatttttt--gtgtatcttatagttaatcgttaattttactttctcatgatcccatt 569  Q
    |||||||||||||||| ||||||||||||| | | ||||||||  ||||||   ||||||| || |||||| ||| ||  |||||||||| | ||||| |    
T  21120084 catagaagtttaatcatttggttgtagattgtag-gttgattttcttttttagttgtatctaattgttaattgttgatgctactttctcagggtcccact 21120182  T
Q  570 gaagagcatgtgtcta 585  Q
    | ||||||||||||||    
T  21120183 ggagagcatgtgtcta 21120198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 557
Target Start/End: Complemental strand, 24972035 - 24971948
Alignment:
Q  472 catagaagtttaatcacttggttgtagattatggagttgatttcatttttt--gtgtatcttatagttaatcgttaattttactttct 557  Q
    |||||||||||||||| ||||||||||||||| | ||||||||  ||||||   ||||||| || |||||||||| ||  ||||||||    
T  24972035 catagaagtttaatcatttggttgtagattatagggttgattttcttttttagttgtatctaattgttaatcgttgatgctactttct 24971948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 459
Target Start/End: Complemental strand, 16311529 - 16311472
Alignment:
Q  402 ccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagttttt 459  Q
    ||||||| || ||||||||| || ||||||  ||||||||||||||||||||| ||||    
T  16311529 ccataaaaaatttcataaaaaaaggtattttatgtgttttaaaagcatggaagatttt 16311472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 418 - 585
Target Start/End: Complemental strand, 9662947 - 9662778
Alignment:
Q  418 aaaagaaagtatttcctgtgttttaaaagcatggaagttttttgtnnnnnnnnn--catagaagtttaatcacttggttgtagattatggagttgatttc 515  Q
    |||||||||||||| || ||||||||||||||||| |||||||||           |||||||||| ||||||||||||||||||||||  ||||||||     
T  9662947 aaaagaaagtattttctatgttttaaaagcatggatgttttttgtaaacaaaaaaacatagaagttaaatcacttggttgtagattatgtggttgatttt 9662848  T
Q  516 attttttgtgtatcttatagttaatcgttaattttactttctcatgatcccattgaagagcatgtgtcta 585  Q
    ||||||| |||||||||| |||||||||||||| |||||||||| ||||||||||||||||| |||||||    
T  9662847 attttttatgtatcttattgttaatcgttaattctactttctcaggatcccattgaagagcaggtgtcta 9662778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 559
Target Start/End: Original strand, 27588856 - 27588945
Alignment:
Q  472 catagaagtttaatcacttggttgtagattatggagttgatttcatttttt--gtgtatcttatagttaatcgttaattttactttctca 559  Q
    |||||||||||||||| ||| ||||||||||| | ||||||||  ||||||   ||||||| || |||||||||| ||  ||||||||||    
T  27588856 catagaagtttaatcatttgattgtagattatagggttgattttcttttttagttgtatctaattgttaatcgttgatgctactttctca 27588945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 398 - 460
Target Start/End: Original strand, 35648158 - 35648220
Alignment:
Q  398 tcctccataaacaaattcataaaagaaagtatttcctgtgttttaaaagcatggaagtttttt 460  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  35648158 tcctccataaacaaattcataaaagaaagaattttctgtgttttaaaagcatggaagtttttt 35648220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 472 - 585
Target Start/End: Complemental strand, 14253092 - 14252977
Alignment:
Q  472 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 569  Q
    |||| ||| ||||||||||||||||||||||||| ||||||||  |||||  | ||||||| || ||| || ||||||  |||||||||| | | |||||    
T  14253092 catataagattaatcacttggttgtagattatggggttgattttcttttttatttgtatctaattgtttattgttaatgctactttctcagggttccatt 14252993  T
Q  570 gaagagcatgtgtcta 585  Q
    | ||||||||||||||    
T  14252992 ggagagcatgtgtcta 14252977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 472 - 585
Target Start/End: Original strand, 26886 - 27000
Alignment:
Q  472 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 569  Q
    ||||||| |||||||| ||||||||||||||| | ||||||||  |||||  | ||||||| || |||||| ||| | | |||||||||| | |||||||    
T  26886 catagaaatttaatcatttggttgtagattatagggttgattttcttttttatttgtatctaattgttaattgttga-tgtactttctcagggtcccatt 26984  T
Q  570 gaagagcatgtgtcta 585  Q
    | ||||||||||||||    
T  26985 ggagagcatgtgtcta 27000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 472 - 585
Target Start/End: Original strand, 45915205 - 45915319
Alignment:
Q  472 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 569  Q
    |||| ||||||||||| |||||||||||||||  |||||||||  |||||  | ||||||| || |||||| ||| | | |||||||||| | |||||||    
T  45915205 cataaaagtttaatcatttggttgtagattatacagttgattttcttttttatttgtatctaattgttaattgttga-tgtactttctcagggtcccatt 45915303  T
Q  570 gaagagcatgtgtcta 585  Q
    | ||||||||||||||    
T  45915304 ggagagcatgtgtcta 45915319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 472 - 574
Target Start/End: Original strand, 18275 - 18379
Alignment:
Q  472 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 569  Q
    |||||||||||||||| ||||||||||||||| | ||||||||  |||||  | ||||||| || || ||| ||| ||  |||||||||| | |||||||    
T  18275 catagaagtttaatcatttggttgtagattatagggttgattttcttttttatttgtatctaattgtcaatggttgatgctactttctcagggtcccatt 18374  T
Q  570 gaaga 574  Q
    |||||    
T  18375 gaaga 18379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 585
Target Start/End: Original strand, 25465 - 25580
Alignment:
Q  472 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 569  Q
    |||||||||||||||| ||||||||| |||||   ||||||||  |||||  | ||||||| || |||||| ||| ||  || ||||| | | |||||||    
T  25465 catagaagtttaatcatttggttgtaaattatatggttgattttcttttttatttgtatctaattgttaattgttgatgctattttcttagggtcccatt 25564  T
Q  570 gaagagcatgtgtcta 585  Q
    | ||||||||||||||    
T  25565 ggagagcatgtgtcta 25580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 585
Target Start/End: Original strand, 29494217 - 29494332
Alignment:
Q  472 catagaagtttaatcacttggttgtagattatggagttgatttcattttt--tgtgtatcttatagttaatcgttaattttactttctcatgatcccatt 569  Q
    |||| ||||||||||| ||||||||||||||| |  |||||||  |||||  | ||||||| || |||||| ||| ||  |||||| ||| | |||||||    
T  29494217 catataagtttaatcatttggttgtagattataggattgattttcttttttatttgtatctaattgttaattgttgatgctactttttcagggtcccatt 29494316  T
Q  570 gaagagcatgtgtcta 585  Q
    | ||||||||||||||    
T  29494317 ggagagcatgtgtcta 29494332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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