View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4885-Insertion-7 (Length: 90)
Name: NF4885-Insertion-7
Description: NF4885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4885-Insertion-7 |
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| [»] chr7 (8 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 76; Significance: 9e-36; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 9e-36
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 4845569 - 4845652
Alignment:
| Q |
7 |
aaacataactttcattccgaacaatataaacgaattgaatcctttttatgctttcgttaacggaatcgaagttgtgtcgatgcc |
90 |
Q |
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| T |
4845569 |
aaacataactttctttccgaacaacataaacgaattgaatcctttttatgctttcgttaacggaatcgaagttgtgtcgatgcc |
4845652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 5e-19
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 4783392 - 4783475
Alignment:
| Q |
7 |
aaacataactttcattccgaacaatataaacgaattgaatcctttttatgctttcgttaacggaatcgaagttgtgtcgatgcc |
90 |
Q |
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| T |
4783392 |
aaacataactttcattcccaacaacacaaaccaattgattcctagttatgctttcattaacggaatcgaagttgtgtctatgcc |
4783475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 5e-19
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 4815821 - 4815904
Alignment:
| Q |
7 |
aaacataactttcattccgaacaatataaacgaattgaatcctttttatgctttcgttaacggaatcgaagttgtgtcgatgcc |
90 |
Q |
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| T |
4815821 |
aaacataactttcattcccaacaacacaaaccaattgagtcctagttatgctttcattaacggaatcgaagttgtgtctatgcc |
4815904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 4637395 - 4637312
Alignment:
| Q |
7 |
aaacataactttcattccgaacaatataaacgaattgaatcctttttatgctttcgttaacggaatcgaagttgtgtcgatgcc |
90 |
Q |
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| T |
4637395 |
aaacataactttcattcctaacagcataaaccaatcaaatccttgttatgcttttattaacgggatcgaagttgtgtcaatgcc |
4637312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 4696747 - 4696830
Alignment:
| Q |
7 |
aaacataactttcattccgaacaatataaacgaattgaatcctttttatgctttcgttaacggaatcgaagttgtgtcgatgcc |
90 |
Q |
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| T |
4696747 |
aaacataactttcattcccagcaacataaaccagtcaaatccttattatgctttcattaacggaatagaagttgtgtcaatgcc |
4696830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 4711632 - 4711712
Alignment:
| Q |
10 |
cataactttcattccgaacaatataaacgaattgaatcctttttatgctttcgttaacggaatcgaagttgtgtcgatgcc |
90 |
Q |
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| T |
4711632 |
cataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtctatgcc |
4711712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 90
Target Start/End: Complemental strand, 4654034 - 4653951
Alignment:
| Q |
7 |
aaacataactttcattccgaacaatataaacgaattgaatcctttttatgctttcgttaacggaatcgaagttgtgtcgatgcc |
90 |
Q |
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| T |
4654034 |
aaacataactttcattcccaacaacacaaaccattcaaatccttattatgctttcattaatggaattgaagttgtgtctatgcc |
4653951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 4644200 - 4644162
Alignment:
| Q |
52 |
ttatgctttcgttaacggaatcgaagttgtgtcgatgcc |
90 |
Q |
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| T |
4644200 |
ttatgctttcattaacggaatcgaagttgtgtctatgcc |
4644162 |
T |
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