View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4885-Insertion-8 (Length: 495)
Name: NF4885-Insertion-8
Description: NF4885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4885-Insertion-8 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 197 - 495
Target Start/End: Complemental strand, 30463159 - 30462861
Alignment:
| Q |
197 |
aatgaaaggggatgaatgcgttatcannnnnnnnnaagaatatgcctcatcattttttgaaaggctggccagtatcaaaattgactgcacttacagaaaa |
296 |
Q |
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| T |
30463159 |
aatgaaaggggatgaatgcgttatcatttattttttagaatatgcctcatcattttttgaaaggcttgccagtatcaaaattgactgcacttacagaaaa |
30463060 |
T |
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| Q |
297 |
ccgctataaatgtttatattgtttctatggcaataacataattggaagacaatttctacactccttactaaaagtggatattgttccgttgttgtcttgt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30463059 |
ccgctataaatgtttatattgtttctatggcaataacataattggaagacaatttctacactccttactaaaagtggatattgttccgttgttgtcttgt |
30462960 |
T |
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| Q |
397 |
ccaccactaaatatgagaccaatgtcctatggacttagtttaatcggcagagacgttgcagtatgtaaaggcggcgtttagaccccaattcctcactta |
495 |
Q |
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| T |
30462959 |
ccaccactaaatatgagaccaatgtcctatggacttagtttaatcggtagagacgttgcagtatgtaaagacggcgtttagaccccaattcctcactta |
30462861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 16 - 172
Target Start/End: Complemental strand, 30463314 - 30463157
Alignment:
| Q |
16 |
gaattgtcaaagggttttttgaaaattcatcataagtgctctcgtgagc-atctttttgtattatacatacatattattatttgtactgatgagcataaa |
114 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30463314 |
gaattgtcaaagggttttttgaaaattcatcacaagtgctctcgtgagctatctttttgtattatacatacatattattatttgtactgatgagcataaa |
30463215 |
T |
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| Q |
115 |
ctaaatgaagagagtagagagaaatttaagtcacgtcagacaaagtatctatgataat |
172 |
Q |
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| T |
30463214 |
ctaaatgaagagagtagagagaaatttaagtcacgtcagacaaagtatctatgataat |
30463157 |
T |
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