View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4885-Insertion-9 (Length: 338)
Name: NF4885-Insertion-9
Description: NF4885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4885-Insertion-9 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 338
Target Start/End: Original strand, 33673424 - 33673757
Alignment:
| Q |
7 |
aatatgtgacaagaaatcaaagccnnnnnnncctttccattaaaggttacaaaaaatggctaatagaacgaggnnnnnnngcttagaattaaaactgttt |
106 |
Q |
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| T |
33673424 |
aatatgtgacaagaaatcaaagccaaaaaaacctttccattgaaggttacaaaaaatggctaatagaacgaggaaaaaaagcttagaattaaaacggttt |
33673523 |
T |
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| Q |
107 |
gcagannnnnnnnn--aggtaagaattgtttgcagatattctatggtttagtagatgaagattatcataactagaaatagaaaaagtagtggctttaatt |
204 |
Q |
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| T |
33673524 |
gcagatttttttttttaggtaagaattgtttgcagatattctacggtttagtagatgaagattatcataactagaaatagaaaaagtagtgactttaatt |
33673623 |
T |
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| Q |
205 |
ttaacggataattaacggtgttaagttgtaaagggaggtatctgtcaaattatgagacttccgaggaggttaatgtctattataaaattagaggggctgt |
304 |
Q |
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| T |
33673624 |
ttaacggataattaacggtgttaagttgtaaagggaggtatctttctaattatgagactttggaggaggttaatgtctattataaaattagagggagtgt |
33673723 |
T |
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| Q |
305 |
ttgtttcatttaagaaaattttgagggaggttag |
338 |
Q |
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| T |
33673724 |
ttgtttcatttaagaaaactacgagggaggttag |
33673757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 206 - 322
Target Start/End: Complemental strand, 20291279 - 20291163
Alignment:
| Q |
206 |
taacggataattaacggtgttaagttgtaaagggaggtatctgtcaaattatgagacttccgaggaggttaatgtctattataaaattagaggggctgtt |
305 |
Q |
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| T |
20291279 |
taacggatgagtaacagtgttaagttgtaaagggatgtatctgtttaattatgaaactttggaggaggttaatgtctattataaaactagagggggtgtt |
20291180 |
T |
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| Q |
306 |
tgtttcatttaagaaaa |
322 |
Q |
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| T |
20291179 |
tgtgttatttaagaaaa |
20291163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 20302959 - 20302904
Alignment:
| Q |
133 |
tttgcagatattctatggtttagtagatgaagattatcataactagaaatagaaaa |
188 |
Q |
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| T |
20302959 |
tttgtagatattatatggtttagtagatgaagattatcataattagaaatcgaaaa |
20302904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 317
Target Start/End: Original strand, 47527937 - 47527985
Alignment:
| Q |
269 |
ggaggttaatgtctattataaaattagaggggctgtttgtttcatttaa |
317 |
Q |
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| T |
47527937 |
ggaggttaatgtctattataaaattagagggggtgtcagtgtcatttaa |
47527985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 51291768 - 51291720
Alignment:
| Q |
269 |
ggaggttaatgtctattataaaattagaggggctgtttgtttcatttaa |
317 |
Q |
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| T |
51291768 |
ggaggttaatgtctattttaaaattagagggggtgtttgtgccatttaa |
51291720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 6237652 - 6237692
Alignment:
| Q |
268 |
aggaggttaatgtctattataaaattagaggggctgtttgt |
308 |
Q |
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| T |
6237652 |
aggaggttagtgtctattttaaaattagaggggatgtttgt |
6237692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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