View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4885_low_5 (Length: 266)
Name: NF4885_low_5
Description: NF4885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4885_low_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 10 - 266
Target Start/End: Complemental strand, 24766462 - 24766206
Alignment:
| Q |
10 |
ataatacttatgaaacaaaagttgaaaaacttgcaacatatgaacccaaaaccaattctggaggcttagacaaatcttaaacatcaaacgataattaaac |
109 |
Q |
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| T |
24766462 |
ataatacttatgaaacaaaagttgaaaaacttgcaacatatgaacccaaaaccaattctggaggcttagacaaatcttaaacatcaaacgataattaaac |
24766363 |
T |
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| Q |
110 |
tactgaagaacaaattatagtctttataacatgaaacaaacttctgaaacctaaaactaaaaataacatgcatccaacaaagtcctccatcgtaaaaatc |
209 |
Q |
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| T |
24766362 |
tactgaagaacaaattatagtctttataacatgaaacaaacttctgaaacttaaaactaaaaataacatacatccaacaaagtcctccatcgtaaaaatc |
24766263 |
T |
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| Q |
210 |
ccatgatgccaccaacgcttgctccacaaaatgcccataattcaacaccttcattta |
266 |
Q |
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| T |
24766262 |
ccatgatgccaccaacgcttgctccacaaaatgcccataatgcaacaccttcattta |
24766206 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 21005047 - 21005091
Alignment:
| Q |
221 |
ccaacgcttgctccacaaaatgcccataattcaacaccttcattt |
265 |
Q |
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| T |
21005047 |
ccaacgcttgctccacaaaatgaccgtaatgcaacaccttcattt |
21005091 |
T |
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