View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4885_low_6 (Length: 264)
Name: NF4885_low_6
Description: NF4885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4885_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 262
Target Start/End: Original strand, 15423717 - 15423965
Alignment:
| Q |
10 |
gcagagatcaaggaagttacctaatgatcttatttatttctgtaatcttgagttatccgaaatcaaagactgcgtgttttcatcattgatgctttctttc |
109 |
Q |
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| T |
15423717 |
gcagagagcaaggaagttacctaatgatcttatttctttctctcatcttgagttatccgaaatcaaagactgcgtgttttcatcattgatgctttctttc |
15423816 |
T |
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| Q |
110 |
ctctcattctctttgttatttttattacttaaagttacatctattttaatgcagttgcttgattgacgattgattttggcatccctctatgaattcttct |
209 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
15423817 |
ctcttattctctttgttatttttattacttaaagttacatctgttttaatgcagttgcttgattgacgattgattttggca----tctatgaattcttct |
15423912 |
T |
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| Q |
210 |
tattgatcaacaatgtcaatcgaagtgaactgctctcgctccaacactcttcc |
262 |
Q |
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| T |
15423913 |
tattgatcaacaatgtcaatcgaagtgaactgctctcactccaacactcttcc |
15423965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 10 - 262
Target Start/End: Original strand, 15513343 - 15513606
Alignment:
| Q |
10 |
gcagagatcaaggaagttacctaatgatcttatttatttctgtaatcttgagttatccgaaatcaaagactgcgtgttttcatcattgatgctttctttc |
109 |
Q |
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| T |
15513343 |
gcagagagcaaggaagttacctaatgatcttatttctttctctcatcttgtgttatccgaaatcaaagacttcgtgttttcatcattgatgctttctttc |
15513442 |
T |
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| Q |
110 |
ctctcattctctttgttatttttattacttaaagttacatct----------attttaatgcagttgcttgattgacgattgattttggcat-ccctcta |
198 |
Q |
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| T |
15513443 |
ctctcattcgctttgttatttttattacttaaagttacatcttcacaaccacgttttaatgcagttgcttgattgacgtttgattttggcatcccctcta |
15513542 |
T |
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| Q |
199 |
tgaattcttcttattgatcaacaatgtcaatcgaagtgaactgctctcgctccaacactcttcc |
262 |
Q |
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| T |
15513543 |
tgaattgttcttattgatcaacaatggcgatccaagtgaactgctctcattccaacactcttcc |
15513606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 15425858 - 15426112
Alignment:
| Q |
13 |
gagatcaaggaagttacctaatgatcttatttatttctgtaatcttgagttatccgaaatcaaagactgcgtgttttcatcattgatgctttctttcctc |
112 |
Q |
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| T |
15425858 |
gagagcaaggaagttacctaatgctcttatttctttctctcatcttgagttatccgaaatcaaagactg-gtgttttcatcattgatgctttctttcctc |
15425956 |
T |
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| Q |
113 |
tcattctctttgttatttttattacttaaagttacatct----------attttaa-tgcagttgcttgattgacgattgattttggcatccctctatga |
201 |
Q |
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| T |
15425957 |
tcattctcttttttatttttgttacttaaagttacatcttcataacgacattttaattgcagttacttgattgacgtttgatttttgcatccatctatga |
15426056 |
T |
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| Q |
202 |
attcttcttattgatcaacaatgtcaatcgaagtgaactgctctcgctccaacact |
257 |
Q |
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| T |
15426057 |
attcttcttattgatcaacaatgtcaatccaggtgaactgctctcactccaacact |
15426112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 69 - 262
Target Start/End: Complemental strand, 15452270 - 15452063
Alignment:
| Q |
69 |
aaatcaaagactgcgtgttttcatcattgatgctttctttcctctcattctctttgttatttttattacttaaagttacatct-----------atttta |
157 |
Q |
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| T |
15452270 |
aaatcaaagactgcttgttttcatcattgatgctttctttcctctcattttctttgttatttttgttacttaaagttacatcttcataacatcgttttaa |
15452171 |
T |
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| Q |
158 |
atgcagttgcttgattgacgattgat---tttggcatccctctatgaattcttcttattgatcaacaatgtcaatcgaagtgaactgctctcgctccaac |
254 |
Q |
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| T |
15452170 |
atgcagttgcttgattgacgtttgattaattttgcatccctctctgaattcttcttattgatcaactttgtcgatccaagtgaactgctctcattccaac |
15452071 |
T |
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| Q |
255 |
actcttcc |
262 |
Q |
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||| |||| |
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| T |
15452070 |
acttttcc |
15452063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 18376809 - 18376905
Alignment:
| Q |
55 |
tcttgagttatccgaaatcaaagactgcgtgttttcatcattgatgctttctttcctctcattctctttgttatttttattacttaaagttacatct |
151 |
Q |
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| T |
18376809 |
tcttgagtcatcggaaatcaaagacggcgtgtattcatcattgatgctttctttcctctcattctctctattatttttgttacctgaagttacatct |
18376905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 18372972 - 18373048
Alignment:
| Q |
179 |
ttgattttggcatccctctatgaattcttcttattgatcaacaatgtcaatcgaagtgaactgctctcgctccaaca |
255 |
Q |
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| T |
18372972 |
ttgatttttgcatctctctctgaactcttctcatcgatcaacaatgtcaacccaagtgaactgctctcactccaaca |
18373048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 15452339 - 15452281
Alignment:
| Q |
21 |
ggaagttacctaatgatcttatttatttctgtaatcttgagttatccgaaatcaaagac |
79 |
Q |
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| T |
15452339 |
ggaagttacctaatgttcttatttctttctctcgtcttgagtcatccgaaatcaaagac |
15452281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 15539960 - 15539894
Alignment:
| Q |
55 |
tcttgagttatccgaaatcaaagactgcgtgttttcatcattgatgctttctttcctctcattctct |
121 |
Q |
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| T |
15539960 |
tcttgagtgatcggaagtcaaagacagcgtgtttttgtcattgattctttctttcctcttattctct |
15539894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 15533428 - 15533468
Alignment:
| Q |
10 |
gcagagatcaaggaagttacctaatgatcttatttatttct |
50 |
Q |
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| T |
15533428 |
gcagagagcaaggaagttacctaatgatcttatttctttct |
15533468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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