View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4885_low_7 (Length: 238)
Name: NF4885_low_7
Description: NF4885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4885_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 2 - 222
Target Start/End: Complemental strand, 40332860 - 40332640
Alignment:
| Q |
2 |
tactgggattcaaatcaaattatccaataatcaatagtaggtatttttgttactactttcttgattctgacttggaccaattagtaggtcccactgttgg |
101 |
Q |
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| T |
40332860 |
tactgggagtcaaatcaaattattcaataatcaatagtagttatttttgttactactttcttgattctgacttggaccaattagtaggtcccactgttgg |
40332761 |
T |
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| Q |
102 |
atgtagttactaattcaaccccgttcgtgatcaatcaacctccctcagctgtccacagtacatggctcatcaaataattatgaattaatggtctcccctt |
201 |
Q |
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| T |
40332760 |
atgtagttgctaattcaaccccgttcgtgatcaatcaacctccctcagctgtccacagtacatggctcatcaaataattatgaattaatggtctcccctt |
40332661 |
T |
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| Q |
202 |
aaactacaggaccctcaattt |
222 |
Q |
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||||||||||||||||||||| |
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| T |
40332660 |
aaactacaggaccctcaattt |
40332640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 62 - 204
Target Start/End: Complemental strand, 40312235 - 40312095
Alignment:
| Q |
62 |
ttgattctgacttggaccaattagtaggtcccactgttggatgtagttactaattcaaccccgttcgtgatcaatcaacctccctcagctgtccacagta |
161 |
Q |
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||||||||| ||||||||||| ||||||| |||| ||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40312235 |
ttgattctggcttggaccaatgagtaggttccac-gttggatgtagttgctgattcaaccc-gttcgtgatcaatcaacctccctcagctgtccacagta |
40312138 |
T |
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| Q |
162 |
catggctcatcaaataattatgaattaatggtctccccttaaa |
204 |
Q |
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| T |
40312137 |
catggctcatcaaataattatggattaatggcctcaccttaaa |
40312095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 62 - 204
Target Start/End: Complemental strand, 40322311 - 40322171
Alignment:
| Q |
62 |
ttgattctgacttggaccaattagtaggtcccactgttggatgtagttactaattcaaccccgttcgtgatcaatcaacctccctcagctgtccacagta |
161 |
Q |
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||||||||| ||||||||||| ||||||| |||| ||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40322311 |
ttgattctggcttggaccaatgagtaggttccac-gttggatgtagttgctgattcaaccc-gttcgtgatcaatcaacctccctcagctgtccacagta |
40322214 |
T |
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| Q |
162 |
catggctcatcaaataattatgaattaatggtctccccttaaa |
204 |
Q |
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|||||||||||||||||||||| |||||||| ||| ||||||| |
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| T |
40322213 |
catggctcatcaaataattatggattaatggcctcaccttaaa |
40322171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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