View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4885_low_8 (Length: 235)

Name: NF4885_low_8
Description: NF4885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4885_low_8
NF4885_low_8
[»] chr2 (7 HSPs)
chr2 (1-134)||(19895857-19895994)
chr2 (66-155)||(32517853-32517943)
chr2 (65-155)||(22999077-22999168)
chr2 (72-157)||(14737645-14737731)
chr2 (67-159)||(30854765-30854859)
chr2 (65-109)||(19134598-19134642)
chr2 (65-105)||(37103324-37103364)
[»] chr1 (14 HSPs)
chr1 (60-155)||(32947617-32947713)
chr1 (60-153)||(8312565-8312659)
chr1 (59-126)||(4628029-4628096)
chr1 (67-117)||(50905438-50905488)
chr1 (68-171)||(236575-236680)
chr1 (67-185)||(25820953-25821073)
chr1 (67-185)||(50248034-50248154)
chr1 (65-155)||(8793210-8793301)
chr1 (60-167)||(17540097-17540207)
chr1 (67-106)||(23225375-23225414)
chr1 (65-106)||(43841863-43841904)
chr1 (65-152)||(7204546-7204634)
chr1 (65-105)||(8785082-8785122)
chr1 (60-155)||(49773489-49773585)
[»] chr4 (6 HSPs)
chr4 (60-155)||(37340143-37340238)
chr4 (60-155)||(13849353-13849449)
chr4 (60-155)||(26186173-26186268)
chr4 (59-172)||(24870593-24870710)
chr4 (67-185)||(13632094-13632215)
chr4 (60-171)||(46343326-46343441)
[»] chr8 (5 HSPs)
chr8 (59-116)||(12320983-12321040)
chr8 (59-114)||(11637629-11637684)
chr8 (86-159)||(13403449-13403523)
chr8 (65-122)||(36442756-36442813)
chr8 (59-155)||(40418124-40418221)
[»] chr7 (7 HSPs)
chr7 (60-172)||(46021446-46021562)
chr7 (60-155)||(9506877-9506973)
chr7 (59-106)||(41708627-41708674)
chr7 (67-185)||(40013268-40013389)
chr7 (65-108)||(47086383-47086426)
chr7 (65-106)||(6344369-6344410)
chr7 (65-117)||(24333343-24333395)
[»] chr6 (5 HSPs)
chr6 (65-117)||(2747552-2747604)
chr6 (67-185)||(10330809-10330930)
chr6 (67-122)||(2018831-2018886)
chr6 (70-113)||(10600320-10600363)
chr6 (67-117)||(9297761-9297811)
[»] chr3 (4 HSPs)
chr3 (66-172)||(31828403-31828511)
chr3 (67-107)||(10071600-10071640)
chr3 (87-185)||(10228981-10229082)
chr3 (65-105)||(9174705-9174745)
[»] chr5 (9 HSPs)
chr5 (60-185)||(13542807-13542934)
chr5 (65-155)||(30527984-30528075)
chr5 (65-155)||(30568324-30568415)
chr5 (87-185)||(26802358-26802459)
chr5 (87-185)||(26809908-26810009)
chr5 (87-185)||(26824935-26825036)
chr5 (60-117)||(29401764-29401821)
chr5 (65-105)||(22096771-22096811)
chr5 (60-155)||(26526510-26526606)


Alignment Details
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 19895994 - 19895857
Alignment:
Q  1 aagagatttagaaactttcataatttgtttaccaaataaaaataacaa----gaataaatgcagtctgataagtcctagctcaacagataaaaatgtcaa 96  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||| ||||||||||||||||||    ||||||||||    
T  19895994 aagagatttagaaactttcataatttgtttaccaaataaaaataacaaaaataaataaatgcagtctcataagtcctagctcaacaagctaaaatgtcaa 19895895  T
Q  97 aattgttaggccaaacgtcataaccgaggtcgaaccct 134  Q
    |||||||||| |||||||||||||||||||||||||||    
T  19895894 aattgttaggtcaaacgtcataaccgaggtcgaaccct 19895857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 155
Target Start/End: Complemental strand, 32517943 - 32517853
Alignment:
Q  66 taagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgagg-tcgaaccctggcatctccactttgtgtgtg 155  Q
    |||||||||| ||||| |||||||||||| ||||||||||||   ||||||| ||||||| |||||||| || | ||||||||||||||||    
T  32517943 taagtcctagttcaactgataaaaatgtcgaaattgttaggctggacgtcatgaccgaggttcgaaccccggtacctccactttgtgtgtg 32517853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 22999077 - 22999168
Alignment:
Q  65 ataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgagg-tcgaaccctggcatctccactttgtgtgtg 155  Q
    ||||||||||||||||| | |||||||| |||||||||||| ||  ||||||| |||| || |||||||| | || ||||||||||||||||    
T  22999077 ataagtcctagctcaacgggtaaaaatgccaaaattgttagtccggacgtcatgaccggggttcgaaccccgacacctccactttgtgtgtg 22999168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 14737731 - 14737645
Alignment:
Q  72 ctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgagg-tcgaaccctggcatctccactttgtgtgtgag 157  Q
    |||| ||||| | ||||||||||||||||||||| ||| |||| || |  |||| ||||||||||  || |||||||||||||||||    
T  14737731 ctagatcaacgggtaaaaatgtcaaaattgttagaccagacgtgatgattgaggttcgaaccctgatatatccactttgtgtgtgag 14737645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 30854859 - 30854765
Alignment:
Q  67 aagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgagg-tcgaaccctggcatctccactt-tgtgtgtgagtt 159  Q
    |||||||| |||||| |||||||||||| ||||||||||| | || ||||| |||| || |||||||| || | || ||||| ||||||||||||    
T  30854859 aagtcctaactcaactgataaaaatgtcgaaattgttaggacgaatgtcatgaccggggctcgaaccccggtaccttcacttgtgtgtgtgagtt 30854765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 19134642 - 19134598
Alignment:
Q  65 ataagtcctagctcaacagataaaaatgtcaaaattgttaggcca 109  Q
    ||||||||||||||||| |  ||||||||| ||||||||||||||    
T  19134642 ataagtcctagctcaactggaaaaaatgtcgaaattgttaggcca 19134598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 37103324 - 37103364
Alignment:
Q  65 ataagtcctagctcaacagataaaaatgtcaaaattgttag 105  Q
    ||||||||||||||||| || ||||||||| ||||||||||    
T  37103324 ataagtcctagctcaactgacaaaaatgtcgaaattgttag 37103364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 60 - 155
Target Start/End: Original strand, 32947617 - 32947713
Alignment:
Q  60 gtctgataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataacc-gaggtcgaaccctggcatctccactttgtgtgtg 155  Q
    |||| ||||||||||||||||| || |||||||| |||||||||||||| |||||| | ||| ||| |||||||| | |||||||||||| ||||||    
T  32947617 gtctcataagtcctagctcaactgacaaaaatgttaaaattgttaggccgaacgtcttgaccggagttcgaaccccgacatctccactttatgtgtg 32947713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 153
Target Start/End: Complemental strand, 8312659 - 8312565
Alignment:
Q  60 gtctgataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgagg-tcgaaccctggcatctccactttgtgtg 153  Q
    |||| ||||||||||| ||||| || ||||||||| ||||||||||||| ||||| || | ||||| |||||||| || | ||||||||||||||    
T  8312659 gtctcataagtcctagttcaacggacaaaaatgtcgaaattgttaggccgaacgttatgatcgaggttcgaaccccggtacctccactttgtgtg 8312565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 4628096 - 4628029
Alignment:
Q  59 agtctgataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgaggt 126  Q
    ||||| ||||||||||||||||| || |||||||   |||||||||||||| ||||||||| ||||||    
T  4628096 agtctcataagtcctagctcaactgacaaaaatgctgaaattgttaggccagacgtcataatcgaggt 4628029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 50905438 - 50905488
Alignment:
Q  67 aagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcat 117  Q
    ||||| ||||||||| ||||||||||| |||||||||||||||||| ||||    
T  50905438 aagtcttagctcaactgataaaaatgttaaaattgttaggccaaacatcat 50905488  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 171
Target Start/End: Original strand, 236575 - 236680
Alignment:
Q  68 agtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgagg-tcgaaccctggcatctccactttgtgtgtgag-ttatgatg 165  Q
    ||||||| |||||| || ||||||||| |||||||||||||  ||||||| |||| || |||||||| || | || |||||| |||||||| ||||||||    
T  236575 agtcctacctcaactgacaaaaatgtcgaaattgttaggccggacgtcatgaccggggttcgaaccccggtaccttcactttatgtgtgagtttatgatg 236674  T
Q  166 gctttg 171  Q
     |||||    
T  236675 actttg 236680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 185
Target Start/End: Complemental strand, 25821073 - 25820953
Alignment:
Q  67 aagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgagg-tcgaaccctggcatctccactt-tgtgtgtgag-ttatga 163  Q
    ||||||||||||||| ||| |||||||| |||||||||||||  | | ||| |||| || ||||||||||| | |||||||| |||||||||| |||| |    
T  25821073 aagtcctagctcaactgat-aaaatgtcgaaattgttaggccggatgccatgaccggggttcgaaccctggtacctccacttgtgtgtgtgagtttataa 25820975  T
Q  164 tggctttgcaattccatctatc 185  Q
    ||||||||| ||| | ||||||    
T  25820974 tggctttgccatttcgtctatc 25820953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 50248034 - 50248154
Alignment:
Q  67 aagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgagg-tcgaaccctggcatctccactt-tgtgtgtgag-ttatga 163  Q
    ||||||||||||||| ||||||| |||| |||||||||||||  | ||||| ||||||| |||||||| |  | |||||||| |||||||||| |||| |    
T  50248034 aagtcctagctcaactgataaaa-tgtcgaaattgttaggccggatgtcatgaccgaggttcgaaccccgatacctccacttgtgtgtgtgagtttataa 50248132  T
Q  164 tggctttgcaattccatctatc 185  Q
    ||||||||| ||| | ||||||    
T  50248133 tggctttgccatttcgtctatc 50248154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 8793301 - 8793210
Alignment:
Q  65 ataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgagg-tcgaaccctggcatctccactttgtgtgtg 155  Q
    |||| |||||||||||| |  |||||| |||||||||||| |||  ||||||| |||| || |||||||| || | ||||||||||||||||    
T  8793301 ataaatcctagctcaactggcaaaaatatcaaaattgttaagccgtacgtcatgaccggggttcgaaccccggtacctccactttgtgtgtg 8793210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 167
Target Start/End: Complemental strand, 17540207 - 17540097
Alignment:
Q  60 gtctgataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgagg-tcgaaccctggcatctccactttgtgt--gtga 156  Q
    |||| |||||||||||||||||   |||||||| | |||||||||||||| ||||||| |||| || |||||||| |  | ||| |||||||||  ||||    
T  17540207 gtctcataagtcctagctcaactagtaaaaatgccgaaattgttaggccagacgtcatgaccggggttcgaaccccgatacctcaactttgtgtgcgtga 17540108  T
Q  157 gttatgatggc 167  Q
     ||||||||||    
T  17540107 tttatgatggc 17540097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 106
Target Start/End: Complemental strand, 23225414 - 23225375
Alignment:
Q  67 aagtcctagctcaacagataaaaatgtcaaaattgttagg 106  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  23225414 aagtcctagctcaactggtaaaaatgtcaaaattgttagg 23225375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 43841904 - 43841863
Alignment:
Q  65 ataagtcctagctcaacagataaaaatgtcaaaattgttagg 106  Q
    |||||||||| |||||| |||||||||||| |||||||||||    
T  43841904 ataagtcctaactcaactgataaaaatgtcgaaattgttagg 43841863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 152
Target Start/End: Complemental strand, 7204634 - 7204546
Alignment:
Q  65 ataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgagg-tcgaaccctggcatctccactttgtgt 152  Q
    ||||||||||||||||| |  ||||||| | ||||||||||||| ||| |||| |||| || |||||||| |  | |||||||||||||    
T  7204634 ataagtcctagctcaactggcaaaaatgccgaaattgttaggccgaacatcatgaccggggttcgaaccccgatacctccactttgtgt 7204546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 8785082 - 8785122
Alignment:
Q  65 ataagtcctagctcaacagataaaaatgtcaaaattgttag 105  Q
    |||||| ||| |||||| |||||||||||||||||||||||    
T  8785082 ataagttctaactcaactgataaaaatgtcaaaattgttag 8785122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 49773585 - 49773489
Alignment:
Q  60 gtctgataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataacc-gaggtcgaaccctggcatctccactttgtgtgtg 155  Q
    |||| ||||| ||||||||||   | ||||||||  ||||||||||||| |||||||||||| ||| |||||||| |  | ||| ||||||||||||    
T  49773585 gtcttataagccctagctcaattaacaaaaatgttgaaattgttaggccgaacgtcataaccagagttcgaaccccgatacctctactttgtgtgtg 49773489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 37340238 - 37340143
Alignment:
Q  60 gtctgataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgaggtcgaaccctggcatctccactttgtgtgtg 155  Q
    |||| ||||||||||| ||||| |||||||||||| ||||||||||||| |||||||| | |  | |||||||  || ||||||||||||||||||    
T  37340238 gtctcataagtcctagttcaactgataaaaatgtcgaaattgttaggccgaacgtcatgatcaggttcgaaccacggtatctccactttgtgtgtg 37340143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 155
Target Start/End: Original strand, 13849353 - 13849449
Alignment:
Q  60 gtctgataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgagg-tcgaaccctggcatctccactttgtgtgtg 155  Q
    |||| ||||||||||||||||| || ||||||||| ||||||||||| || ||||| | | || || |||||||| | || ||||||||||||||||    
T  13849353 gtctcataagtcctagctcaactgacaaaaatgtcgaaattgttaggtcagacgtcttgatcggggttcgaaccccgacacctccactttgtgtgtg 13849449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 26186268 - 26186173
Alignment:
Q  60 gtctgataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgaggtcgaaccctggcatctccactttgtgtgtg 155  Q
    |||| |||||| ||||||||||   |||||||||| |||||||||||||| ||||||| |  | |||||||||| || |  |||||||||||||||    
T  26186268 gtctcataagttctagctcaactagtaaaaatgtcgaaattgttaggccagacgtcatgattggggtcgaaccccggtacttccactttgtgtgtg 26186173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 59 - 172
Target Start/End: Original strand, 24870593 - 24870710
Alignment:
Q  59 agtctgataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgagg-tcgaaccctggcatctccacttt--gtgtgtg 155  Q
    ||||| ||||||||||||||||| |  ||||||| | |||||||||||||  |||| || ||||||| |||||||  || | |||||||||  |||||||    
T  24870593 agtctcataagtcctagctcaactggcaaaaatgccgaaattgttaggccggacgtaatgaccgaggttcgaacctcggtacctccactttacgtgtgtg 24870692  T
Q  156 ag-ttatgatggctttgc 172  Q
    || |||||||||||||||    
T  24870693 agtttatgatggctttgc 24870710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 13632094 - 13632215
Alignment:
Q  67 aagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgagg-tcgaaccctggcatctccactt-tgtgtgtgag-ttatga 163  Q
    ||||||||||||||| |  ||||||||| |||||||||||||  | | ||| ||||||| ||||||||  | | |||||||| |||||||||| |||| |    
T  13632094 aagtcctagctcaactggcaaaaatgtcgaaattgttaggccggatgccatgaccgaggttcgaaccccagtacctccacttgtgtgtgtgagtttataa 13632193  T
Q  164 tggctttgcaattccatctatc 185  Q
    ||||||||| ||| | ||||||    
T  13632194 tggctttgccatttcgtctatc 13632215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 171
Target Start/End: Original strand, 46343326 - 46343441
Alignment:
Q  60 gtctgataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgagg-tcgaaccctggcatctccacttt--gtgtgtga 156  Q
    |||| ||||||||||||||||| || |||| || | |||||||||||||  ||||||| |||| || ||||||||| | | ||||| |||  ||||||||    
T  46343326 gtctcataagtcctagctcaactgacaaaagtgccgaaattgttaggccggacgtcatgaccggggttcgaaccctagtacctccattttacgtgtgtga 46343425  T
Q  157 g-ttatgatggctttg 171  Q
    | |||||||| |||||    
T  46343426 gtttatgatgactttg 46343441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 12320983 - 12321040
Alignment:
Q  59 agtctgataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtca 116  Q
    ||||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||    
T  12320983 agtctcataagtcctagctcaactgacaaaaatgtcaaaattgttaggccgaacgtca 12321040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 11637684 - 11637629
Alignment:
Q  59 agtctgataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgt 114  Q
    |||| |||||||||||||||||| |  ||||||||| |||||||||||||||||||    
T  11637684 agtcagataagtcctagctcaactggaaaaaatgtcgaaattgttaggccaaacgt 11637629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 13403523 - 13403449
Alignment:
Q  86 aaaaatgtcaaaattgttaggccaaacgtcataaccg-aggtcgaaccctggcatctccactttgtgtgtgagtt 159  Q
    |||||| || ||||||||||||  ||||||||||||| || |||||||| || | ||||||||||||||||||||    
T  13403523 aaaaatatcgaaattgttaggctgaacgtcataaccggagttcgaaccccggtacctccactttgtgtgtgagtt 13403449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 122
Target Start/End: Complemental strand, 36442813 - 36442756
Alignment:
Q  65 ataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccg 122  Q
    |||||||||| |||||| |||||||||| | |||||||||||||  ||||||| ||||    
T  36442813 ataagtcctaactcaactgataaaaatgccgaaattgttaggccggacgtcatgaccg 36442756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 40418124 - 40418221
Alignment:
Q  59 agtctgataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataacc-gaggtcgaaccctggcatctccactttgtgtgtg 155  Q
    ||||| |||||| |||||||||| | ||||||||   |||||||||||||| ||||||| ||| ||| |||||||| |  | ||||||||| ||||||    
T  40418124 agtctcataagttctagctcaactggtaaaaatgctgaaattgttaggccagacgtcatgaccggagttcgaaccccgatacctccactttatgtgtg 40418221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 172
Target Start/End: Complemental strand, 46021562 - 46021446
Alignment:
Q  60 gtctgataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgagg-tcgaaccctggcatctccactttgtgtgtgag- 157  Q
    |||| ||||||||||||||||| |||||||||| | |||||||||||||  | ||||| |||| || |||||||| || | ||||| |||||||||| |     
T  46021562 gtctcataagtcctagctcaactgataaaaatgccgaaattgttaggccggatgtcatgaccggggttcgaaccccggtacctccattttgtgtgtgtga 46021463  T
Q  158 --ttatgatggctttgc 172  Q
      |||||||||||||||    
T  46021462 gtttatgatggctttgc 46021446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 9506973 - 9506877
Alignment:
Q  60 gtctgataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgagg-tcgaaccctggcatctccactttgtgtgtg 155  Q
    |||| ||||||||||||| ||| || |||||| ||||||||||||||||  || |||| ||||||| |||||| | || | ||||||||||||||||    
T  9506973 gtctcataagtcctagcttaactgacaaaaatatcaaaattgttaggccggacatcatgaccgaggttcgaactccggtacctccactttgtgtgtg 9506877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 41708674 - 41708627
Alignment:
Q  59 agtctgataagtcctagctcaacagataaaaatgtcaaaattgttagg 106  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  41708674 agtctcataaatcctagctcaactgataaaaatgtcaaaattgttagg 41708627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 40013268 - 40013389
Alignment:
Q  67 aagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgagg-tcgaaccctggcatctccactt-tgtgtgtgag-ttatga 163  Q
    ||||||||||||||| || ||||||| | |||||||||||||  | | ||| ||||||| |||||||| || | |||||||| |||||||||| |||| |    
T  40013268 aagtcctagctcaactgacaaaaatgccgaaattgttaggccggatgccatgaccgaggttcgaaccccggtacctccacttgtgtgtgtgagtttataa 40013367  T
Q  164 tggctttgcaattccatctatc 185  Q
    ||||||||| ||| | ||||||    
T  40013368 tggctttgccatttcgtctatc 40013389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 47086426 - 47086383
Alignment:
Q  65 ataagtcctagctcaacagataaaaatgtcaaaattgttaggcc 108  Q
    ||||||||||||||||| || ||||||||| |||||||||||||    
T  47086426 ataagtcctagctcaactgacaaaaatgtcgaaattgttaggcc 47086383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 6344410 - 6344369
Alignment:
Q  65 ataagtcctagctcaacagataaaaatgtcaaaattgttagg 106  Q
    ||||||||||||||||| | |||||||||||||||| |||||    
T  6344410 ataagtcctagctcaactggtaaaaatgtcaaaatttttagg 6344369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 24333343 - 24333395
Alignment:
Q  65 ataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcat 117  Q
    |||||||||||||||||  | ||||||||| ||||||||||||| | ||||||    
T  24333343 ataagtcctagctcaacttacaaaaatgtcgaaattgttaggccgagcgtcat 24333395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 2747552 - 2747604
Alignment:
Q  65 ataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcat 117  Q
    ||||||||||||||  | || ||||||||||||||||||||||||||||||||    
T  2747552 ataagtcctagctcgcctgacaaaaatgtcaaaattgttaggccaaacgtcat 2747604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 10330809 - 10330930
Alignment:
Q  67 aagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgagg-tcgaaccctggcatctccactt-tgtgtgtgag-ttatga 163  Q
    ||||||||||||||| |  ||||||| |||||||||||||||| | | ||| |||| || |||||||| || | |||||||| |||||||||| |||| |    
T  10330809 aagtcctagctcaactggcaaaaatgccaaaattgttaggccagatgccatgaccggggatcgaaccccggtacctccacttgtgtgtgtgagtttataa 10330908  T
Q  164 tggctttgcaattccatctatc 185  Q
    ||||||||| ||| | ||||||    
T  10330909 tggctttgccatttcgtctatc 10330930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 2018886 - 2018831
Alignment:
Q  67 aagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccg 122  Q
    ||||||||||||||| | |||||||||| ||||||||||| |||| ||||| ||||    
T  2018886 aagtcctagctcaactggtaaaaatgtcgaaattgttaggtcaaatgtcatgaccg 2018831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 10600363 - 10600320
Alignment:
Q  70 tcctagctcaacagataaaaatgtcaaaattgttaggccaaacg 113  Q
    ||||| ||||||  ||||||||||||||||||||||||||||||    
T  10600363 tcctaactcaactaataaaaatgtcaaaattgttaggccaaacg 10600320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 117
Target Start/End: Original strand, 9297761 - 9297811
Alignment:
Q  67 aagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcat 117  Q
    ||||||||| ||||| || ||||||||| |||||||||||||| |||||||    
T  9297761 aagtcctagttcaactgacaaaaatgtcgaaattgttaggccagacgtcat 9297811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 172
Target Start/End: Original strand, 31828403 - 31828511
Alignment:
Q  66 taagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgagg-tcgaaccctggcatctccactttgtgtgtgag-ttatga 163  Q
    ||||||||| ||||||  ||||||||| | |||||||||||||| | || ||||||| || |||||| | |||| |||||||||||||||| | ||||||    
T  31828403 taagtcctaactcaacttataaaaatgccgaaattgttaggccagatgtaataaccggggttcgaactccggcacctccactttgtgtgtgtgtttatga 31828502  T
Q  164 tggctttgc 172  Q
    ||| |||||    
T  31828503 tggttttgc 31828511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 10071640 - 10071600
Alignment:
Q  67 aagtcctagctcaacagataaaaatgtcaaaattgttaggc 107  Q
    ||||||||||||||| || ||||||||||||||||||||||    
T  10071640 aagtcctagctcaactgacaaaaatgtcaaaattgttaggc 10071600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 185
Target Start/End: Original strand, 10228981 - 10229082
Alignment:
Q  87 aaaatgtcaaaattgttaggccaaacgtcataaccgagg-tcgaaccctggcatctccactt-tgtgtgtgag-ttatgatggctttgcaattccatcta 183  Q
    |||||| ||||||||||||||| || ||||| |||| || |||||||| || | |||||||| |||||||||| |||| |||||||||| ||| | ||||    
T  10228981 aaaatgccaaaattgttaggccgaatgtcatgaccggggttcgaaccccggtacctccacttgtgtgtgtgagtttataatggctttgccatttcgtcta 10229080  T
Q  184 tc 185  Q
    ||    
T  10229081 tc 10229082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 9174745 - 9174705
Alignment:
Q  65 ataagtcctagctcaacagataaaaatgtcaaaattgttag 105  Q
    |||| |||||||||||  |||||||||||||||||||||||    
T  9174745 ataaatcctagctcaattgataaaaatgtcaaaattgttag 9174705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 185
Target Start/End: Complemental strand, 13542934 - 13542807
Alignment:
Q  60 gtctgataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgaggtcgaaccctggcatctccactttgtgtgtgag-- 157  Q
    |||| |||||||||| ||||||  | |||||||||||||||||||||    ||||||| |||| | |||||| | | || ||||||||||||| ||||      
T  13542934 gtctcataagtcctaactcaacttaaaaaaatgtcaaaattgttaggttggacgtcatgaccgggttcgaactccgacacctccactttgtgtttgagtt 13542835  T
Q  158 ttatgatggctttgcaattccatctatc 185  Q
    |||||||| |||||| ||  ||||||||    
T  13542834 ttatgatgcctttgccatctcatctatc 13542807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 30527984 - 30528075
Alignment:
Q  65 ataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgag-gtcgaaccctggcatctccactttgtgtgtg 155  Q
    ||||||||||||||||| | | |||||| | |||||||||||||  || |||| | ||||  |||||||| |||| ||||||||||||||||    
T  30527984 ataagtcctagctcaaccggtgaaaatgccgaaattgttaggccggacatcatgatcgagattcgaaccccggcacctccactttgtgtgtg 30528075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 30568324 - 30568415
Alignment:
Q  65 ataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgag-gtcgaaccctggcatctccactttgtgtgtg 155  Q
    ||||||||||||||||| | | |||||| | |||||||||||||  || |||| | ||||  |||||||| |||| ||||||||||||||||    
T  30568324 ataagtcctagctcaaccggtgaaaatgccgaaattgttaggccggacatcatgatcgagattcgaaccccggcacctccactttgtgtgtg 30568415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 185
Target Start/End: Original strand, 26802358 - 26802459
Alignment:
Q  87 aaaatgtcaaaattgttaggccaaacgtcataaccgagg-tcgaaccctggcatctccactt-tgtgtgtgag-ttatgatggctttgcaattccatcta 183  Q
    |||||| ||||||||||||||| || ||||| |||| || |||||||| || | |||||||| |||||||||| |||| |||||||||| ||| | ||||    
T  26802358 aaaatgccaaaattgttaggccgaatgtcatgaccggggttcgaaccccggtacctccacttgtgtgtgtgagtttataatggctttgccatttcgtcta 26802457  T
Q  184 tc 185  Q
    ||    
T  26802458 tc 26802459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 185
Target Start/End: Original strand, 26809908 - 26810009
Alignment:
Q  87 aaaatgtcaaaattgttaggccaaacgtcataaccgagg-tcgaaccctggcatctccactt-tgtgtgtgag-ttatgatggctttgcaattccatcta 183  Q
    |||||| ||||||||||||||| || ||||| |||| || |||||||| || | |||||||| |||||||||| |||| |||||||||| ||| | ||||    
T  26809908 aaaatgccaaaattgttaggccgaatgtcatgaccggggttcgaaccccggtacctccacttgtgtgtgtgagtttataatggctttgccatttcgtcta 26810007  T
Q  184 tc 185  Q
    ||    
T  26810008 tc 26810009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 185
Target Start/End: Original strand, 26824935 - 26825036
Alignment:
Q  87 aaaatgtcaaaattgttaggccaaacgtcataaccgagg-tcgaaccctggcatctccactt-tgtgtgtgag-ttatgatggctttgcaattccatcta 183  Q
    |||||| ||||||||||||||| || ||||| |||| || |||||||| || | |||||||| |||||||||| |||| |||||||||| ||| | ||||    
T  26824935 aaaatgccaaaattgttaggccgaatgtcatgaccggggttcgaaccccggtacctccacttgtgtgtgtgagtttataatggctttgccatttcgtcta 26825034  T
Q  184 tc 185  Q
    ||    
T  26825035 tc 26825036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 29401764 - 29401821
Alignment:
Q  60 gtctgataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcat 117  Q
    |||| |||||| ||| |||||| ||||||||| || ||||||||||| ||||||||||    
T  29401764 gtctcataagttctaactcaacggataaaaatatcgaaattgttaggtcaaacgtcat 29401821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 22096811 - 22096771
Alignment:
Q  65 ataagtcctagctcaacagataaaaatgtcaaaattgttag 105  Q
    |||||||||| |||||| ||| |||||||||||||||||||    
T  22096811 ataagtcctaactcaactgattaaaatgtcaaaattgttag 22096771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 155
Target Start/End: Original strand, 26526510 - 26526606
Alignment:
Q  60 gtctgataagtcctagctcaacagataaaaatgtcaaaattgttaggccaaacgtcataaccgagg-tcgaaccctggcatctccactttgtgtgtg 155  Q
    |||| ||||||| ||||||||| |  ||||||  | ||||||||||||| |||||||| ||||||| |||||| | || | ||||||||| ||||||    
T  26526510 gtctcataagtcttagctcaactggcaaaaataccgaaattgttaggccgaacgtcatgaccgaggttcgaactccggtacctccactttatgtgtg 26526606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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