View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4886-Insertion-12 (Length: 168)
Name: NF4886-Insertion-12
Description: NF4886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4886-Insertion-12 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 3e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 3e-71
Query Start/End: Original strand, 7 - 161
Target Start/End: Original strand, 16803018 - 16803170
Alignment:
| Q |
7 |
agttgcgactggcgaaagaaatcagtctttcacaacacaatgaatctataaaataaattaagttttattagggtatgtattcacattttgtcaatacatt |
106 |
Q |
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| T |
16803018 |
agttgcgactggcaaaagaaatcagtctttcacaacacgatgaatctataaaa--aattaagttttattagggtatgtattcacattttgtcaatacatt |
16803115 |
T |
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| Q |
107 |
tttgacacaattattttcaatagatgaaatttgttggatttaatttgtatacatc |
161 |
Q |
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| T |
16803116 |
tttgacacaattattttcaatagatgaaatttgttggatttaatttgtatacatc |
16803170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 3e-71
Query Start/End: Original strand, 7 - 161
Target Start/End: Original strand, 16842301 - 16842453
Alignment:
| Q |
7 |
agttgcgactggcgaaagaaatcagtctttcacaacacaatgaatctataaaataaattaagttttattagggtatgtattcacattttgtcaatacatt |
106 |
Q |
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| T |
16842301 |
agttgcgactggcaaaagaaatcagtctttcacaacacgatgaatctataaaa--aattaagttttattagggtatgtattcacattttgtcaatacatt |
16842398 |
T |
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| Q |
107 |
tttgacacaattattttcaatagatgaaatttgttggatttaatttgtatacatc |
161 |
Q |
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| T |
16842399 |
tttgacacaattattttcaatagatgaaatttgttggatttaatttgtatacatc |
16842453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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