View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4886-Insertion-14 (Length: 250)
Name: NF4886-Insertion-14
Description: NF4886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4886-Insertion-14 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 51319041 - 51319283
Alignment:
| Q |
8 |
attagatggtacacaagttcttgtcggtgtaaaatcgcaacgtgaagtaaactttgtccttcagaattgacttccataaatatattcggattatagttga |
107 |
Q |
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| T |
51319041 |
attagatggtacacaagttcttgtcggtgtaaaatcgcaacgtgaagtaaactttgcccttcagaattgacttccataaatatattcggattatagttga |
51319140 |
T |
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| Q |
108 |
aaataaattctaaaattaagatgttgcctaattgtgctgcatcaaacattgcttttgaagtttttgtatattgtagaaattcatcttcttcctcttccat |
207 |
Q |
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| T |
51319141 |
aaataaattctaaaattaagatgttgcctaactgtgctgcatcaaacattgcttttgaagtttttgtatattgtagaaattcatcttcttcctcttccat |
51319240 |
T |
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| Q |
208 |
tctctcaaacaatactcttacaagatctttgtagcaaggagca |
250 |
Q |
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| T |
51319241 |
tctctcaaacaatactcttacaagatctttgtagcaaggagca |
51319283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 172
Target Start/End: Original strand, 51342896 - 51343024
Alignment:
| Q |
44 |
gcaacgtgaagtaaactttgtccttcagaattgacttccataaatatattcggattatagttgaaaataaattctaaaattaagatgttgcctaattgtg |
143 |
Q |
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| T |
51342896 |
gcaatgtgaagtatgctttgcccttttgaattgacttccatgaatagattcggattgtagttgaagataaaatctaaaattataatgtttcctgattttg |
51342995 |
T |
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| Q |
144 |
ctgcatcaaacattgcttttgaagttttt |
172 |
Q |
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| T |
51342996 |
ctgcctcaaacattgcttttgaagttttt |
51343024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 147
Target Start/End: Original strand, 51312728 - 51312826
Alignment:
| Q |
49 |
gtgaagtaaactttgtccttcagaattgacttccataaatatattcggattatagttgaaaataaattctaaaattaagatgttgcctaattgtgctgc |
147 |
Q |
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| T |
51312728 |
gtgaagtaagttttgcccttgaggattgacttccataaacaaattggggttatagttaaaaataaattttaaaaccatgatgtttcctgattttgctgc |
51312826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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