View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4886-Insertion-2 (Length: 778)
Name: NF4886-Insertion-2
Description: NF4886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4886-Insertion-2 |
 | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 8 - 448
Target Start/End: Complemental strand, 1182785 - 1182340
Alignment:
| Q |
8 |
ctactttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttccagcagttc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1182785 |
ctactttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttctagcagttc |
1182686 |
T |
|
| Q |
108 |
accaatgtacttctgatgatgcat-----ttcccatcttgctagctttaaactccattcctcagaaataagagagttttcctaaatcagtcatttcaaat |
202 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1182685 |
accaatgtacttctgatgatgcataacctttcccatcttgctagctttaaactccattcctaagaaataagagagttttcctaaatcagtcatttcaaat |
1182586 |
T |
|
| Q |
203 |
tcacactacattgtgtgtttgaacttctcaatctcactttgattacttccagttaccaatagctcattcacatataattatatcattgtgatatcacttt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1182585 |
tcacactacattgtgtgtttgaacttctcaatctcactttgattacttccagttaccaatagctcattcacatataattatatcattgtgatatcacttt |
1182486 |
T |
|
| Q |
303 |
cactcaagttctgaacatacataccatattcagctttgcatcttttaaatccaatttaaatcaagaactgatcaattcatttgttccattctctaggagc |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1182485 |
cactcaagttctgaacatacataccatattcaactttgcatcttttaaatccaatttaaatcaagaactgatcaattcatttgttccattctctaggagc |
1182386 |
T |
|
| Q |
403 |
ctgcttcaatccataaagtgtcttatgcagttcgtataccatatgc |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1182385 |
ctgcttcaatccataaagtgtcttatgcagttcgtataccatatgc |
1182340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 495 - 778
Target Start/End: Complemental strand, 1182334 - 1182051
Alignment:
| Q |
495 |
tttcttctaatagtccatttaagaatcaagacttcacatctaaatgaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttc |
594 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1182334 |
tttcttctaatagtccatttaagaatcaagacttcacatctaaatgaaacaatgatcatttcttactgctatctaatgcaacaaccaatctcccattttc |
1182235 |
T |
|
| Q |
595 |
taatcttgccactagtgcaaacacttcattataatcaacaccatatctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgcca |
694 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1182234 |
taatcttgccactagtgcaaacacttcattataatcaacaccatatcgctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgcca |
1182135 |
T |
|
| Q |
695 |
tctggattcatttttaccttgaaaattcatttcacatcaatggttttcttcttctctggtaattcaactaattcacgggtgtta |
778 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1182134 |
tctggattcatttttaccttgaaaattcatttcacatcaatggttttcttcttctctgataattcaactaattcacgggtgtta |
1182051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 440 - 747
Target Start/End: Complemental strand, 18194360 - 18194053
Alignment:
| Q |
440 |
accatatgctcctttacttttacttcaaatcctggaggttgagtaacatatacactttcttctaatagtccatttaagaatcaagacttcacatctaaat |
539 |
Q |
| |
|
|||||||||||||| | |||||||||||||||| ||||| |||| ||| || | ||||| | | ||||||| | ||| |||||| |||||||||| |
|
|
| T |
18194360 |
accatatgctccttcccacttacttcaaatcctggtggttgtgtaatatacactttctcttcaagtggtccattcagaaatgcagactttacatctaaat |
18194261 |
T |
|
| Q |
540 |
gaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaacacttcattataatcaacaccata |
639 |
Q |
| |
|
| | | |||||| || |||||||| | | ||| || |||||||| | |||||| ||| || ||| | ||||| || |||||||| ||||||||||| |
|
|
| T |
18194260 |
gtgatagtgaccagtttttactgcttgcaagtgccactaccaatctaatagtttctagtctagcaactggagcaaatacctcattatagtcaacaccata |
18194161 |
T |
|
| Q |
640 |
tctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacatcaatggtt |
739 |
Q |
| |
|
|||||| ||||| ||||||||||||| || ||||||| ||| || | || ||||| ||||||| ||| ||||||||||| ||||| |||||||||||| |
|
|
| T |
18194160 |
tctctgtaggaaacctctagccactaatctggctttgtatttagagattgaaccatcaggattcaatttcaccttgaaaatccatttaacatcaatggtt |
18194061 |
T |
|
| Q |
740 |
ttcttctt |
747 |
Q |
| |
|
|||||||| |
|
|
| T |
18194060 |
ttcttctt |
18194053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 29 - 768
Target Start/End: Original strand, 8169101 - 8169841
Alignment:
| Q |
29 |
attcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttccagcagttcaccaatgtacttctgatgatg |
128 |
Q |
| |
|
||||||| | |||||||||| | ||||| |||||||||| ||| ||||||| || ||||||||| |||| | || |||||||| ||||| || ||||| |
|
|
| T |
8169101 |
attcatcaaacttagcatttatctcagatggatttgtgatagtattgcaatttgacatatcaaatctttcatgtagctcaccaatatacttttgttgatg |
8169200 |
T |
|
| Q |
129 |
cat-----ttcccatcttgctagctttaaactccattcctcagaaa-taagagagttttcctaaatcagtcatttcaaattcacactacattgtgtgttt |
222 |
Q |
| |
|
||| |||| | |||| ||| ||| || ||||||||| | ||| ||||| | | ||||||| || ||||||| ||||||||||| |||||||||||| |
|
|
| T |
8169201 |
cataactattcctagcttgatagttttgaattccattcctaaaaaaataagaaaatcttcctaagtcggtcattttaaattcacactgcattgtgtgttt |
8169300 |
T |
|
| Q |
223 |
gaacttctcaatctcactttgattacttccagttaccaatagctcattcacatataattatatcattgtgatatcactttcactcaagttctgaacatac |
322 |
Q |
| |
|
||| |||||||||||||||| ||| ||||||||||| ||||| |||| |||||| | || |||| |||||||| | |||| | |||||||||||| | |
|
|
| T |
8169301 |
gaatttctcaatctcactttaattgcttccagttactaatagatcatccacataaa----ta-cattatgatatcagtctcacccgagttctgaacatgc |
8169395 |
T |
|
| Q |
323 |
ataccatattcagctttgcatcttttaaatccaatttaaatcaagaactgatcaattcatttgttccattctctaggagcctgcttcaatccataaagtg |
422 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| || ||||| ||||| ||||||| ||||||||| |||||| ||||| ||| || |||||||||| |
|
|
| T |
8169396 |
ataccatactcagctttgcatcttttgaatccaagttgaatcatgaactagtcaattctcttgttccatgctctagaagcctacttaaagccataaagtg |
8169495 |
T |
|
| Q |
423 |
tcttatgcagttcgtataccatatgctcctttacttttacttcaaatcctggaggttgagtaacatatacactttcttctaatagtccatttaagaatca |
522 |
Q |
| |
|
||||| | || ||| |||||||||||| || || | | |||||||| | |||||| ||||||||||| | ||||||| ||||||||||||| |||| |
|
|
| T |
8169496 |
atttatgtaatttgtacaccatatgctcccttcctctgatttcaaatcttagaggttcagtaacatatatagtttcttccaatagtccatttaggaatgc |
8169595 |
T |
|
| Q |
523 |
agacttcacatctaaatgaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaacacttca |
622 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||| |||| ||| ||||||| |||||| |
|
|
| T |
8169596 |
agactttacatctaaatgaaacaatgaccatttcttactgctggttaatgcaataaccaatctcaatatttctatccttgatactggtgcaaagacttca |
8169695 |
T |
|
| Q |
623 |
ttataatcaacaccatatctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattc |
722 |
Q |
| |
|
||||| |||| ||||| || |||||||||||||| ||||| ||||||||||| ||||||| |||| ||| |||||||| ||| || |||||||| | |
|
|
| T |
8169696 |
ttatagtcaatttcatattaatgtaggaagcctctagctactagtcttgctttgtgctttgaaaatgtgtcatttggattcaatttgactttgaaaatcc |
8169795 |
T |
|
| Q |
723 |
atttcacatcaatggttttcttcttctctggtaattcaactaattc |
768 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||||| | ||||||||| |
|
|
| T |
8169796 |
atttcacattaatgtttttcttcttcgctggtaagttaactaattc |
8169841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 166 - 747
Target Start/End: Original strand, 32368905 - 32369486
Alignment:
| Q |
166 |
gaaataagagagttttcctaaatcagtcatttcaaattcacactacattgtgtgtttgaacttctcaatctcactttgattacttccagttaccaatagc |
265 |
Q |
| |
|
|||||| || ||| ||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32368905 |
gaaatatgatagtcttcctaaataagtcatttcaaattcacactgcatagtgtgtttgaacttctcaatctcactttgattacttccagttaccaatagg |
32369004 |
T |
|
| Q |
266 |
tcattcacatataattatatcattgtgatatcactttcactcaagttctgaacatacataccatattcagctttgcatcttttaaatccaatttaaatca |
365 |
Q |
| |
|
|||| |||||||| |||||| || || | |||| ||| ||||||||||| || ||||| |||||||||||| | || || ||||||| || | |
|
|
| T |
32369005 |
tcatctacatataagcatatcacagttatgttctattcattcagtttctgaacatatattccatactcagctttgcatttcttgaaaccaatttgaagta |
32369104 |
T |
|
| Q |
366 |
agaactgatcaattcatttgttccattctctaggagcctgcttcaatccataaagtgtcttatgcagttcgtataccatatgctcctttacttttacttc |
465 |
Q |
| |
|
|||||||||||| | ||||||||| ||||||| | || ||||| |||||||||| || || | | ||| |||| ||||||||| |||||||||| |
|
|
| T |
32369105 |
ggaactgatcaatcctcttgttccatgctctaggtgtttgtttcaagccataaagtgctttgtgtaacttgtacaccacatgctccttcccttttacttc |
32369204 |
T |
|
| Q |
466 |
aaatcctggaggttgagtaacatatacactttcttctaatagtccatttaagaatcaagacttcacatctaaatgaaacaatgaccatttcttactgcta |
565 |
Q |
| |
|
|||| | || ||||| |||||||| | | |||||||||| ||||||| | ||| |||||| ||||||| |||| | |||||||| ||||| || | |
|
|
| T |
32369205 |
aaattcaggtggttgtgtaacatacatatcttcttctaatggtccattcagaaatgcagacttaacatctatatgagataatgaccaattcttgctacag |
32369304 |
T |
|
| Q |
566 |
tctaatgcaacaaccaatctcccattttctaatcttgccactagtgcaaacacttcattataatcaacaccatatctctgcaggaagcctctagccacta |
665 |
Q |
| |
|
| | ||| || |||||||| | |||||||| | || ||| | ||||| || |||||||| |||||||||||||||| | ||| ||||| || || | |
|
|
| T |
32369305 |
gccagtgccaccaccaatcttatagtttctaatttagctactggagcaaatacctcattatagtcaacaccatatctctataagaaacctctggcaacca |
32369404 |
T |
|
| Q |
666 |
gccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacatcaatggttttcttctt |
747 |
Q |
| |
|
|| ||||||| ||| |||| || |||| ||||||| ||| || |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
32369405 |
atctggctttgtatttggaaaatgattcatcaggattcaatttcactttgaaaatccatttaacatcaatggttttcttctt |
32369486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 32368750 - 32368865
Alignment:
| Q |
16 |
tcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttccagcagttcaccaatgt |
115 |
Q |
| |
|
|||||||| |||| ||||||| |||||||||||||||||| ||||| | || ||||||| || |||| | |||| |||| |||||||| ||||||| |
|
|
| T |
32368750 |
tcttcattagtacactcatccaacttagcatttgtttcagatggattcgatgcaatgttgcagtcaatcatttgaaacctttcaagcagttccccaatgt |
32368849 |
T |
|
| Q |
116 |
acttctgatgatgcat |
131 |
Q |
| |
|
|||| || |||||||| |
|
|
| T |
32368850 |
acttttgttgatgcat |
32368865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 16 - 747
Target Start/End: Original strand, 4958716 - 4959452
Alignment:
| Q |
16 |
tcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttccagcagttcaccaatgt |
115 |
Q |
| |
|
|||||||| || |||||||| || ||||||||||||||||| ||||||| || | |||||||| |||| | ||| |||| |||||||| ||||||| |
|
|
| T |
4958716 |
tcttcattactgcattcatctagtttagcatttgtttcagatggatttgatgcattattgcaatcaatcatttgaaatatttcaagcagttctccaatgt |
4958815 |
T |
|
| Q |
116 |
acttctgatgatgcat-----ttcccatcttgctagctttaaactccattcctcagaaataagagagttttcctaaatcagtcatttcaaattcacacta |
210 |
Q |
| |
|
||||||| |||||||| | || ||||||| | | ||||| | ||| |||| |||| | | |||| |||||| |||||||||| ||||||| |
|
|
| T |
4958816 |
acttctgctgatgcatcactatgcctgctttgctagttgtgaactcaaatccaaggaaagaagataatcttcccaaatcaatcatttcaaactcacactt |
4958915 |
T |
|
| Q |
211 |
cattgtgtgtttgaacttctcaatctcactttgattacttccagttaccaatagctcattcacatataattatatcattgtgatatcactttcactcaag |
310 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||||||| |||||| | || |||| ||| |||| | || || || | | ||| | | | |
|
|
| T |
4958916 |
catagtgtgtttgaacttctcaatctcacttggattacttctagttactagtaagtcatctacaaataagcagattatagtaacgttttcatcatttagg |
4959015 |
T |
|
| Q |
311 |
ttctgaacatacataccatattcagctttgcatcttttaaatccaatttaaatcaagaactgatcaattcatttgttccattctctaggagcctgcttca |
410 |
Q |
| |
|
||||| ||||| ||||||||||| ||||||||| |||| |||||||||| || | |||||||||||| | || |||||| ||||||| | || |||| |
|
|
| T |
4959016 |
ttctggacatatataccatattctgctttgcattttttgaatccaatttgaagtaggaactgatcaatcctcttattccatgctctaggtacttgtttca |
4959115 |
T |
|
| Q |
411 |
atccataaagtgtcttatgcagttcgtataccatatgctcctttacttttacttcaaatcctggaggttgagtaacatatacactttcttctaatagtcc |
510 |
Q |
| |
|
| ||||| || | || || | | ||| ||||||||||||||| | ||||||||||| |||| ||||| | || ||| ||| |||||| | | |||| |
|
|
| T |
4959116 |
agccatagagggctttgtgtaacttgtacaccatatgctcctttccacttacttcaaatactggtggttgtgcaatatacacatcttcttcaagtggtcc |
4959215 |
T |
|
| Q |
511 |
atttaagaatcaagacttcacatctaaatgaaacaatgaccatttcttactgctatctaatgcaacaaccaatctcccattttctaatcttgccactagt |
610 |
Q |
| |
|
||| | ||| |||||| ||||||||||| | |||||||| || |||||||| | | ||| || |||||||| | |||||| ||| || ||| | |
|
|
| T |
4959216 |
attcagaaatgcagactttacatctaaatgtgataatgaccagtttttactgcttacaagtgccactaccaatctaatagtttctagtctagcaactgga |
4959315 |
T |
|
| Q |
611 |
gcaaacacttcattataatcaacaccatatctctgcaggaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcattttta |
710 |
Q |
| |
|
||||| || |||||||| || |||||||||||||| ||||| |||||||| |||| || ||||||| ||| || | || ||||| |||||| ||| | |
|
|
| T |
4959316 |
gcaaatacctcattatagtctacaccatatctctgtaggaaacctctagcaactaatctggctttgtatttagagattgacccatcatgattcaatttca |
4959415 |
T |
|
| Q |
711 |
ccttgaaaattcatttcacatcaatggttttcttctt |
747 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
4959416 |
ccttgaaaatccatttaacatcaatggttttcttctt |
4959452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 6e-30; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 26076223 - 26075976
Alignment:
| Q |
16 |
tcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttccagcagttcaccaatgt |
115 |
Q |
| |
|
|||||||| ||||||||||| || ||||||||||||||||| ||||||| || | |||||||| |||| | ||| |||| |||||||| ||||||| |
|
|
| T |
26076223 |
tcttcattactacattcatctagtttagcatttgtttcagatggatttgatgcattattgcaatcaatcatttgaaatctttcaagcagttctccaatgt |
26076124 |
T |
|
| Q |
116 |
acttctgatgatgcat-----ttcccatcttgctagctttaaactccattcctcagaaataagagagttttcctaaatcagtcatttcaaattcacacta |
210 |
Q |
| |
|
||||||| |||||||| | || ||||||| | | ||||| | ||| ||||||||| | | |||| ||| ||||||||||||| ||||||| |
|
|
| T |
26076123 |
acttctgttgatgcatcactatgcctgctttgctagttgtgaactcaaatccaaggaaataagataatcttcccaaaccagtcatttcaaactcacactt |
26076024 |
T |
|
| Q |
211 |
cattgtgtgtttgaacttctcaatctcactttgattacttccagttac |
258 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26076023 |
catagtgtgtttgaacttctcaatctcacttggattacttccagttac |
26075976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 649 - 731
Target Start/End: Complemental strand, 8190578 - 8190496
Alignment:
| Q |
649 |
gaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacat |
731 |
Q |
| |
|
||||||| |||| |||| |||||||||||| ||||||| |||||||| || ||||| || || |||||||| ||||| |||| |
|
|
| T |
8190578 |
gaagcctttagctactaaccttgctttgtgctttgaaagtgtgccatttgtattcagcttgactttgaaaatccattttacat |
8190496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 383 - 444
Target Start/End: Complemental strand, 50935258 - 50935197
Alignment:
| Q |
383 |
ttgttccattctctaggagcctgcttcaatccataaagtgtcttatgcagttcgtataccat |
444 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||| | || |||||||||| ||| ||||| |
|
|
| T |
50935258 |
ttgttccatgctctaggagcctgctttaatccatataatgctttatgcagtttgtacaccat |
50935197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 8 - 279
Target Start/End: Complemental strand, 5243041 - 5242769
Alignment:
| Q |
8 |
ctactttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttccagcagttc |
107 |
Q |
| |
|
||||||||||||||||| | |||||||| |||||||||||||||||||||||||| || ||||||| |||||| ||||||||| || |||||||| |
|
|
| T |
5243041 |
ctactttctcttcattgatgcattcatctagcttagcatttgtttcagaaggattagttgcagtgttacaatctaccatatcaaa----tcaagcagttc |
5242946 |
T |
|
| Q |
108 |
accaatgtacttctgatgatgcat-----ttcccatcttgctagctttaaactccattcctcagaaataagagagttttcctaaatcagtcatttcaaat |
202 |
Q |
| |
|
||||| ||||| || |||||||| | || | ||||| ||||| || || | ||| |||||| || ||| |||| ||||||| |||||||||| |
|
|
| T |
5242945 |
cccaatatacttttgttgatgcattacaatacctacattgctggctttgaattctaatccaaggaaatatgacagtcttccaaaatcagacatttcaaat |
5242846 |
T |
|
| Q |
203 |
tcacactacattgtgtgtttgaacttctcaatctcactttgattacttccagttaccaatagctcattcacatataa |
279 |
Q |
| |
|
|||||| ||| |||||||||||||| ||||||||| | |||| ||||||| |||||||| |||| |||||||| |
|
|
| T |
5242845 |
tcacaccgcatagtgtgtttgaacttttcaatctcattacgattgcttccaggcaccaataggtcatctacatataa |
5242769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 180 - 279
Target Start/End: Complemental strand, 12368411 - 12368312
Alignment:
| Q |
180 |
ttcctaaatcagtcatttcaaattcacactacattgtgtgtttgaacttctcaatctcactttgattacttccagttaccaatagctcattcacatataa |
279 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| || |||||||||||||||| | || ||||| |||||||| |
|
|
| T |
12368411 |
ttcccaaatcagtcatttcaaactcacacttcatagtgtgtttgaacttctcaatctcagttggattacttccagttactagtaagtcatttacatataa |
12368312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 12370638 - 12370527
Alignment:
| Q |
16 |
tcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcatatcaaacttttccagcagttcaccaatgt |
115 |
Q |
| |
|
|||||||| || |||||||| || ||||||||||||||||| ||||||| || | |||||||| |||| | ||| |||| ||||||| ||||||| |
|
|
| T |
12370638 |
tcttcattactgcattcatctagtttagcatttgtttcagatggatttgatgcattattgcaatcaatcatttgaaatctttcaagcagttatccaatgt |
12370539 |
T |
|
| Q |
116 |
acttctgatgat |
127 |
Q |
| |
|
||||||| |||| |
|
|
| T |
12370538 |
acttctgctgat |
12370527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 649 - 731
Target Start/End: Complemental strand, 17153 - 17071
Alignment:
| Q |
649 |
gaagcctctagccactagccttgctttgtgttttgaaactgtgccatctggattcatttttaccttgaaaattcatttcacat |
731 |
Q |
| |
|
||||||| |||| |||| |||||||||||| ||||||| |||||||| || ||||| || || |||||||| ||||| |||| |
|
|
| T |
17153 |
gaagcctttagctactaaccttgctttgtgctttgaaagtgtgccatttgtattcagcttgactttgaaaatccattttacat |
17071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University