View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4886-Insertion-4 (Length: 628)
Name: NF4886-Insertion-4
Description: NF4886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4886-Insertion-4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 605; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 8 - 628
Target Start/End: Original strand, 42335321 - 42335941
Alignment:
| Q |
8 |
tcattctctatccacacgtgacatgttgaaccaattaggggtccatgctatcttactcaactttatattgagctttgggtgattctcctacacctcaaag |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42335321 |
tcattctctatccacacgtgacatgttgaaccaattaggggtccatgctatcttactcaactttatattgagctttgggtgattctcctacacctcaaag |
42335420 |
T |
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| Q |
108 |
cctctgatttggagatccaacacctgggtgagtgccatcaaaactcgtcagctcaacctgctccaccgctagcggaatcggatagtagttccattgtcaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
42335421 |
cctctgatttggagatccaacacctgggtgagtgccatcaaaactcgtcagctcaacctgctccaccgccagcggaatcggatagtaattccattgtcaa |
42335520 |
T |
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| Q |
208 |
aaccatattccaaacctttccgtctattttgatcattctttgactcccctttgactccttctgaccacgcgaatgggctggactgtggagtatgtggtgc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42335521 |
aaccatattccaaacctttccgtctattttgatcattctttgactcccctttgactccttctgaccacgcgaatgggctggactgtggagtatgtggtcc |
42335620 |
T |
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| Q |
308 |
cacctgtgatagacaggactctataagcatttgctgaaagtaattatgcatctatgttcgtattcttgcctatcggtcaattaactccttcaccacagct |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42335621 |
cacctgtgatagacaggactctataagcatttgctgaaagtaattatgcatctatgttcgtattcttgcctatcggtcaattaactccttcaccacagct |
42335720 |
T |
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| Q |
408 |
tctagataagacacgcgaacagccatgacggtgtttctgacagctccgcacttaggcagacactctccaacaatagtattcggcacgttgaaccaatatc |
507 |
Q |
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| T |
42335721 |
tctagataagacacgcgaacagccatggcggtgtttctgacagctccgcacttaggcagacactctccaacaatagtattcggcacgttgaaccaatatc |
42335820 |
T |
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| Q |
508 |
atagacttaaggtggaaaagcatgctagtgattgtatttgtatttgtaattgaataggaaataatttttgttgggatgcactagtcgatcatcctaaaca |
607 |
Q |
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| T |
42335821 |
atagacttaaggtggaaaagcatgctagtgattgtatttgtatttgtaattgaataggaaataatttttgttgggatgcactagtcgatcatcctaaaca |
42335920 |
T |
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| Q |
608 |
tttggtgctgttggttctgta |
628 |
Q |
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| T |
42335921 |
tttggtgctgttggttctgta |
42335941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 10175559 - 10175488
Alignment:
| Q |
8 |
tcattctctatccacacgtgacatgttgaaccaattaggggtccatgctatcttactcaactttatattgag |
79 |
Q |
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||||||| ||||||||||||||| ||| ||| ||| |||||||||||||||||||||||||||||| ||||| |
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| T |
10175559 |
tcattctgtatccacacgtgacacgttaaactaatgaggggtccatgctatcttactcaactttatcttgag |
10175488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 10175604 - 10175675
Alignment:
| Q |
8 |
tcattctctatccacacgtgacatgttgaaccaattaggggtccatgctatcttactcaactttatattgag |
79 |
Q |
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||||||||||||||||| ||||| |||||| ||| |||||||||||||||||||||||||||||| ||||| |
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| T |
10175604 |
tcattctctatccacacttgacacattgaacaaatgaggggtccatgctatcttactcaactttatcttgag |
10175675 |
T |
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