View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4886-Insertion-5 (Length: 513)
Name: NF4886-Insertion-5
Description: NF4886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4886-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 7 - 513
Target Start/End: Original strand, 43569135 - 43569640
Alignment:
| Q |
7 |
atgttggagggagttgtgtcgaggctgaggataagggtagagatgggaatcttgtgatggaagaaacattgaaaactatgaagatggtttttggtgagaa |
106 |
Q |
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| T |
43569135 |
atgttggagggagttgtgtggaggctgaggataagggtagagatgggaatcttgtgatggaagaaaccttgaaaactatgaagatggtttttggtgagaa |
43569234 |
T |
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| Q |
107 |
gctttttgttcttagacttgggaatcgtggagaggatagttctcttgctcttacaggtgactttcctgatattgattcgtggaagaacgcgcttccgaat |
206 |
Q |
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| T |
43569235 |
gctttttgttcttagacttgggaatcgtggagaggatagttctcttgctcttacaggtgactttcctgatattgattcgtggaagaacgcgcttccgaat |
43569334 |
T |
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| Q |
207 |
tcgttgagatgttatgttgatttatggacaccttattctggttagtttaattgtttgcgctgaaataaacatgctcaccaattgtttgtgtttatttcta |
306 |
Q |
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| T |
43569335 |
tcgttgagatgttatgttgatttatggagaccttattctggttagtgtaattgtttgcgctgaaataaacatgctcaccaattgtttgtgtttattccta |
43569434 |
T |
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| Q |
307 |
tgtgaaactaggcttcgctccctcattttannnnnnnnncagtggtttgaggaagaccacagataaatcataaatcccattttgtgcagaatatgagttg |
406 |
Q |
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| T |
43569435 |
tgtgaaactaggcttcgctccctcatttt-ttttttttccagtggtttgaggaagaccacagataaatcataaatcccattttgtgcagaatatgagttg |
43569533 |
T |
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| Q |
407 |
taatttgtaatgttaacatgcaattaaattatgagcaaaatgcttaattgtttcacatttaattttccatttgctggttgttttaatgtatagaacttaa |
506 |
Q |
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| T |
43569534 |
taatttgtaatgttaacatgcaattaaattatgagcaaaatgcttaattgtttcacatttaattttccatttgctggttgttttgatgtatagaacttaa |
43569633 |
T |
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| Q |
507 |
gtagtag |
513 |
Q |
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| T |
43569634 |
gtagtag |
43569640 |
T |
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