View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4886-Insertion-6 (Length: 485)
Name: NF4886-Insertion-6
Description: NF4886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4886-Insertion-6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 7 - 485
Target Start/End: Original strand, 43561396 - 43561874
Alignment:
| Q |
7 |
aatatggcattgctgaatatcacaactaaactatgttctttttattataacaaaaaactctgttcttcaaccatcatgtcacataaactttctactgacg |
106 |
Q |
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| T |
43561396 |
aatatggcattgctgaatatcacaactaaactatgttctttttattataacaaaaaactctgttcttcaaccatcatgtcacataaactttctactgacg |
43561495 |
T |
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| Q |
107 |
gatacaaccaactttcaaccgagtcaatcaacataaactcacttctcacctcaaccgagttataactctcttctatattaggaagctcaacaatctcact |
206 |
Q |
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| T |
43561496 |
gatacaaccaactttcaaccgagtcaatcaacataaactcacttctcacctcaaccgagttataactctcttctatattaggaagctcaacaatctcact |
43561595 |
T |
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| Q |
207 |
aagctctgaagactctgatgaatatgaaggtgagtcagagacttcagagctgagtgagattgttgagcgcaatatttgagaatcaaattccaccatggca |
306 |
Q |
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| T |
43561596 |
aagctctgtagactctgatgaatatgaaggtgagtcagagacttcagagctgagtgagattgttgagcgcaatatttgagaatcaaattccaccatggca |
43561695 |
T |
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| Q |
307 |
gcagcttctgcagctgcaacttgaatgtcacgtggagacaacgttgttggtcttggaagcatgtgcgctatttcggggaagttcagaattgctgaatgac |
406 |
Q |
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| T |
43561696 |
gcagcttctgcagctgcaacttgaatgtcacgtggagacaacgttgttggtcttggaagcatgtgcgctatttcggggaagttaagaattgctgaatgac |
43561795 |
T |
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| Q |
407 |
cctttatactcaaagcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtga |
485 |
Q |
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| T |
43561796 |
cctttatactcaaagcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattcgtga |
43561874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 396 - 481
Target Start/End: Original strand, 505520 - 505605
Alignment:
| Q |
396 |
tgctgaatgaccctttatactcaaagcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattc |
481 |
Q |
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| T |
505520 |
tgctgaatgaccctttatagctaaagcagctacatcatgtgctctagctgccatttcagctgtagggtatgttccaagccatattc |
505605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 397 - 481
Target Start/End: Original strand, 16357796 - 16357880
Alignment:
| Q |
397 |
gctgaatgaccctttatactcaaagcagcaacatcatgcgctctagctgccatttcaggagtagcgtaagttccaagccagattc |
481 |
Q |
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| T |
16357796 |
gctgaatgaccctttatggctaaagcagctacatcatgagctctagctgccatttcagctgtagggtatgttccaagccatattc |
16357880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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