View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4886-Insertion-7 (Length: 398)
Name: NF4886-Insertion-7
Description: NF4886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4886-Insertion-7 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 398
Target Start/End: Complemental strand, 3701800 - 3701410
Alignment:
| Q |
8 |
gtaataaaacattaaacggacctaatttgggtcccaatggagttagtttagctttccacataagaaaatagatatagcaagtagcagttgcgtgacgaac |
107 |
Q |
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| T |
3701800 |
gtaataaaacattaaacggacctaatttgggtcccaatggagttagtttagctttccacataagaaaatagatatagcaagtagcagttgcgtgaccaac |
3701701 |
T |
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| Q |
108 |
taa-tcgagtttaatcgatcaagtattaaatcattcaatgcaattatgcaaacattatagacactaaaactttcacacgatttctatttgacaaatatat |
206 |
Q |
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| T |
3701700 |
taactcgagtttaatcgatcaagtattaaatcattcaatgcaattatgcaaacattatagacaccaaaactttcaca-gatttctatttgacaaatacat |
3701602 |
T |
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| Q |
207 |
attccctctattcttttcttctttgcatagcttacccaataaaacgacgataattgaaatttccatttacaacgaaaagttttccactcgagtaccgaat |
306 |
Q |
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| T |
3701601 |
attccctctattcttttcttctttgcatagcttacccaataaaacgacgataattgaaatttccatttacaacgaaaagttttccactcgagtaccgaat |
3701502 |
T |
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| Q |
307 |
tcaaaaagagctcttgtagaggacccatcttctgctaatgcacaagctgcatcatctttaagctcttcaattctttgtcgaatctcacttcg |
398 |
Q |
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| T |
3701501 |
tcaaaaagagctcttgtagaggacccatcttctgctaatgcacaagctgcatcatctttaagctcttcaattctttgtcgaatctcacttcg |
3701410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 72 - 395
Target Start/End: Complemental strand, 3708504 - 3708180
Alignment:
| Q |
72 |
aaaatagatatagcaagtagcagttgcgtgacgaactaa-tcgagtttaatcgatcaagtattaaatcattcaatgcaattatgcaaacattatagacac |
170 |
Q |
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| T |
3708504 |
aaaatagatatagcaagtagcagttgtgtggcgaacaaactcgagtttaatagatcaagtattaaattattcaatgcaattatgcaaacattatagacac |
3708405 |
T |
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| Q |
171 |
taaaactttcacacgatttctatttgacaaatatatattccctctattcttttcttctttgcatagcttacccaataaaacgacgataattgaaatttcc |
270 |
Q |
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| T |
3708404 |
caaaactctcacatgatttctattcgacaaatacatattccctcgattcttttcttctttgcacagctttccctataaaacgttgataattgaaatttcc |
3708305 |
T |
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| Q |
271 |
atttacaacgaaaagttttccactcgagtaccgaattcaaaaagagctcttgtagaggacccatcttctgctaatgcacaagctgcatcatctttaagct |
370 |
Q |
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| T |
3708304 |
atttataacgaaaagtttgctactcgagtaccgaattcacaaagtgctcttgtagaggacccatcttctgctaatgcacaagctgcatcatctttaagct |
3708205 |
T |
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| Q |
371 |
cttcaattctttgtcgaatctcact |
395 |
Q |
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| T |
3708204 |
cttcaattctttgtcgaatctcact |
3708180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 221 - 395
Target Start/End: Original strand, 3769842 - 3770015
Alignment:
| Q |
221 |
tttcttctttgcatagcttacccaataaaacgacgataattgaaatttccatttacaacgaaaagttttccactcgagtaccgaattcaaaaagagctct |
320 |
Q |
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| T |
3769842 |
tttcttctttgcatagctttcccg-taaaacgtaaataaatgaaatttccaattataaggaaaagttttccacacgagtaccaaattcaaaaagtgctct |
3769940 |
T |
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| Q |
321 |
tgtagaggacccatcttctgctaatgcacaagctgcatcatctttaagctcttcaattctttgtcgaatctcact |
395 |
Q |
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| T |
3769941 |
tgtaaaggacccatctcctgctaatgcacaagctgcttcatcttttagctcttcaattctttgtcgaatctcact |
3770015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 154 - 395
Target Start/End: Complemental strand, 3719929 - 3719689
Alignment:
| Q |
154 |
gcaaacattatagacactaaaactttcacacgatttctatttgacaaatatatattccctctattcttttcttctttgcatagcttacccaataaaac-g |
252 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||| ||||| || | |||||| |||||| ||||||| |||||||||| || ||||| | |
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| T |
3719929 |
gcaaacattatagacactaaaactctcaca--atttctattcgacaattacacattcccactattcatttcttcactgcatagcttttcctgtaaaaatg |
3719832 |
T |
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| Q |
253 |
acgataattgaaatttccatttacaacgaaaagttttccactcgagtaccgaattcaaaaagagctcttgtagaggacccatcttctgctaatgcacaag |
352 |
Q |
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| T |
3719831 |
tcaataaattaaatttccttttataacaacaagtttcctatttgagttccaaattcagaaaatgcccttgtagaggacccatcttctgctaatgcacaag |
3719732 |
T |
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| Q |
353 |
ctgcatcatctttaagctcttcaattctttgtcgaatctcact |
395 |
Q |
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| T |
3719731 |
ctgcatcatttttaagctcttccattctttgtcgaatctcact |
3719689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 320 - 398
Target Start/End: Original strand, 3777610 - 3777688
Alignment:
| Q |
320 |
ttgtagaggacccatcttctgctaatgcacaagctgcatcatctttaagctcttcaattctttgtcgaatctcacttcg |
398 |
Q |
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| T |
3777610 |
ttgtagaggacccatcttctgctaatgcaccagcagcaacatctttaagatcttcaattctttgtcgaatctcacttcg |
3777688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 319 - 384
Target Start/End: Original strand, 33004851 - 33004916
Alignment:
| Q |
319 |
cttgtagaggacccatcttctgctaatgcacaagctgcatcatctttaagctcttcaattctttgt |
384 |
Q |
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| T |
33004851 |
cttgtggaagacccatcttctgctaatgcacaagtagaagcatatttaagctcttcaattctttgt |
33004916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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