View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4886_high_15 (Length: 287)
Name: NF4886_high_15
Description: NF4886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4886_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 9870928 - 9871149
Alignment:
| Q |
1 |
tattcttttagatatgtcgatttcaatttcgacctacatggtttttatttagttatataatgttttaaaaaacattataagtataaacaataactccaag |
100 |
Q |
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| T |
9870928 |
tattcttttagacatgtcgatttcaatttcgacctacatggtttttatttagttatataatgttttaaaaaacattataagtataaacaataattccaag |
9871027 |
T |
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| Q |
101 |
gtcaaatatatatgtcatcgtcaatagtttaaagggaaaaattgatacagcacaagagttatcggcataccaaaaataattttcctttagaaaaaagagt |
200 |
Q |
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| T |
9871028 |
gtcaaatttatatgtcatcgtcaatagtttaaagggaaaaattgatacagcacaagagttatcggtatagaaaaaaaaa-----aattaaagaaaagagt |
9871122 |
T |
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| Q |
201 |
tcaagtctaagaagctttgacaagtga |
227 |
Q |
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| T |
9871123 |
tcaagtctaagaagctttgacaagtga |
9871149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 176
Target Start/End: Original strand, 9876470 - 9876642
Alignment:
| Q |
4 |
tcttttagatatgtcgatttcaatttcgacctacatggtttttatttagttatataatgttttaaaaaacattataagtataaacaataactccaaggtc |
103 |
Q |
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||||||||| ||||| |||||||| | ||||||||||| |||||| || |||||||||||||||||||||||||| | ||||| |||| ||||||||| |
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| T |
9876470 |
tcttttagacatgtccatttcaatatggacctacatggattttatctacttatataatgttttaaaaaacattatttggataaagaatacttccaaggtc |
9876569 |
T |
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| Q |
104 |
aaatatatatgtcatcgtcaatagtttaaagggaaaaattgatacagcacaagagttatcggcataccaaaaa |
176 |
Q |
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| T |
9876570 |
aaatatatacgtcaccttctatagtttaaagggaaacgttgatatatcacaagagttatcgacataccaaaaa |
9876642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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