View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4886_high_2 (Length: 486)
Name: NF4886_high_2
Description: NF4886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4886_high_2 |
 | |
|
| [»] scaffold1453 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 15 - 470
Target Start/End: Complemental strand, 30049752 - 30049274
Alignment:
| Q |
15 |
catccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcatat----gacataaacctacttaactt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30049752 |
catccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcatatatatgacataaacctacttaactt |
30049653 |
T |
|
| Q |
111 |
gtgcagataatcttact-------------------aacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattca |
191 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049652 |
gtgcagataatcttacttgtgcagcatagttttactaacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattca |
30049553 |
T |
|
| Q |
192 |
gaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtg |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049552 |
gaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcctagcttgcttcttagctccatgaacttggcactaggaagtg |
30049453 |
T |
|
| Q |
292 |
cttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacatt |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049452 |
cttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacatt |
30049353 |
T |
|
| Q |
392 |
gatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaatt |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30049352 |
gatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaatt |
30049274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 15 - 470
Target Start/End: Complemental strand, 7162704 - 7162227
Alignment:
| Q |
15 |
catccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcatatgacataaacctacttaactt---- |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7162704 |
catccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatgcttagctgatgtcatatgacataaacctgcttaacttgtgc |
7162605 |
T |
|
| Q |
111 |
-----------------gtgcag-ataatcttactaacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcag |
192 |
Q |
| |
|
|||||| ||| | |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7162604 |
agataaccttattacttgtgcagcatagttttactaacaaaataagttaaaatgattacacacataagcaataaagtaacataaacaataaagtattcag |
7162505 |
T |
|
| Q |
193 |
aaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgc |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7162504 |
aaaagttttataggtcaattagtcaacactcctccttaaaacttttctggaatactcccagcttgcttcttagctccatgaacttggcactagcaagtgc |
7162405 |
T |
|
| Q |
293 |
ttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattg |
392 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7162404 |
cttttttaaaatgtctgccaattgttcttcagaactgcagtgctgcaattttacatctccattctgttcagcttctcttatagcatgaaatttgacattg |
7162305 |
T |
|
| Q |
393 |
atatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaatt |
470 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7162304 |
atatgctttgctcttccatgttgaattggatttttggcagttgctatagctgatttgttgtcacaccatagcacaatt |
7162227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 30045349 - 30045121
Alignment:
| Q |
15 |
catccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtc----atatgacataaacctacttaactt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30045349 |
catccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcatatatatgacataaacctacttaactt |
30045250 |
T |
|
| Q |
111 |
gtgcagataatc-------------------ttactaacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattca |
191 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30045249 |
gtgcagataatcttacttgtgcagcatagttttactaacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattca |
30045150 |
T |
|
| Q |
192 |
gaaaagttttataggtcaattagtcaaca |
220 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30045149 |
gaaaagttttataggtcaattagtcaaca |
30045121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 15 - 470
Target Start/End: Complemental strand, 3946006 - 3945528
Alignment:
| Q |
15 |
catccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcatat----gacataaacctacttaactt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3946006 |
catccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcatatatatgacataaacctacttaactt |
3945907 |
T |
|
| Q |
111 |
gtgcagataatcttact-------------------aacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattca |
191 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945906 |
gtgcagataatcttacttgtgcagcatagttttactaacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattca |
3945807 |
T |
|
| Q |
192 |
gaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtg |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945806 |
gaaaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcctagcttgcttcttagctccatgaacttggcactaggaagtg |
3945707 |
T |
|
| Q |
292 |
cttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacatt |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945706 |
cttttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacatt |
3945607 |
T |
|
| Q |
392 |
gatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaatt |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3945606 |
gatatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaatt |
3945528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 15 - 222
Target Start/End: Complemental strand, 3941607 - 3941377
Alignment:
| Q |
15 |
catccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcatat----gacataaacctacttaactt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3941607 |
catccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcatatatatgacataaacctacttaactt |
3941508 |
T |
|
| Q |
111 |
gtgcagataatcttact-------------------aacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattca |
191 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3941507 |
gtgcagataatcttacttgtgcagcatagttttactaacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattca |
3941408 |
T |
|
| Q |
192 |
gaaaagttttataggtcaattagtcaacact |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
3941407 |
gaaaagttttataggtcaattagtcaacact |
3941377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 13 - 470
Target Start/End: Complemental strand, 22365632 - 22365156
Alignment:
| Q |
13 |
atcatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcatatgacataaacctacttaacttgt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22365632 |
atcatccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatgcttagttgatgtcatatgacataaacctacttaacttgt |
22365533 |
T |
|
| Q |
113 |
gcagataatcttact-------------------aacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcaga |
193 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365532 |
gcagataaccttacttatgcagcatagttttactaacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcaga |
22365433 |
T |
|
| Q |
194 |
aaagttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgct |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365432 |
aaagttttataggtcaattagtcaacactcctccttaaaacttatctggaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgct |
22365333 |
T |
|
| Q |
294 |
tttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattga |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365332 |
tttgttaaaatgtctgccaattgttcttcagaactgcagtgctgcaattttacatctccattctgttcagcttctcttatagcatgaaatttgacattga |
22365233 |
T |
|
| Q |
394 |
tatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaatt |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22365232 |
tatgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaatt |
22365156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 22361243 - 22361019
Alignment:
| Q |
15 |
catccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcatatgacataaacctacttaacttgtgc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22361243 |
catccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatgcttagctgatgtcatatgacataaacctacttaacttgtgc |
22361144 |
T |
|
| Q |
115 |
agataatc-------------------ttactaacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaa |
195 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22361143 |
agataaccttacttgtgcagcatagctttactaacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaa |
22361044 |
T |
|
| Q |
196 |
agttttataggtcaattagtcaaca |
220 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
22361043 |
agttttataggtcaattagtcaaca |
22361019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 23397196 - 23397298
Alignment:
| Q |
15 |
catccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcatatgacataaacctacttaacttgtgc |
114 |
Q |
| |
|
|||||||||||| |||||||||| ||| || |||||||| ||||||||| | | ||| ||| | |||||||||| |||||||||||| ||||||||| | |
|
|
| T |
23397196 |
catccatacatctttcttacatatttagagtcaaatacttagtaatgacataacttatactttgttgatgtcatacgacataaacctatttaacttgtac |
23397295 |
T |
|
| Q |
115 |
aga |
117 |
Q |
| |
|
||| |
|
|
| T |
23397296 |
aga |
23397298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 22135264 - 22135200
Alignment:
| Q |
363 |
gcttctcttatagcatgaaatttgacattgatatgctttgttcttccatgttgaattggattttt |
427 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| ||||| ||||| ||||| |||| ||||||||| |
|
|
| T |
22135264 |
gcttctcttatggcatggaattttacattgatgtgcttagttctaccatgctgaactggattttt |
22135200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 23397337 - 23397404
Alignment:
| Q |
136 |
aagttaaaataattacacaca--taagcaataaagtaacataaacaataaagtattcagaaaagtttt |
201 |
Q |
| |
|
|||||||||| |||||||||| || ||||||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
23397337 |
aagttaaaatcattacacacacataggcaataaagtaacattaacaacgaaatattcagaaaagtttt |
23397404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 13 - 470
Target Start/End: Original strand, 39949428 - 39949902
Alignment:
| Q |
13 |
atcatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcatatgacataaacctacttaacttg- |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39949428 |
atcatccatacatccttcttacatacttatagccaaatacttagtaataactcagcctatgtttagctgatgtcatatgacataaacctacttaacttgc |
39949527 |
T |
|
| Q |
112 |
---------------tgcag-ataatcttactaacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaa |
195 |
Q |
| |
|
||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39949528 |
agataaccttacttgtgcagcatagttttactaacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtataaagaaa |
39949627 |
T |
|
| Q |
196 |
agttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttt |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39949628 |
agttttataggtcaattagtcaacactcctccttaaaacttttctggaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttt |
39949727 |
T |
|
| Q |
296 |
tgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattgata |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39949728 |
tgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaattttacattgata |
39949827 |
T |
|
| Q |
396 |
tgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaatt |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39949828 |
tgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaatt |
39949902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 39953820 - 39954045
Alignment:
| Q |
13 |
atcatccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcatatgacataaacctacttaacttg- |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39953820 |
atcatccatacatccttcttacatacttatagccaaatacttagtaataactcagtctatgtttagctgatgtcatatgacataaacctacttaacttgc |
39953919 |
T |
|
| Q |
112 |
---------------tgcag-ataatcttactaacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaa |
195 |
Q |
| |
|
||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39953920 |
agataaccttacttgtgcagcatagttttactaacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtataaagaaa |
39954019 |
T |
|
| Q |
196 |
agttttataggtcaattagtcaacac |
221 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
39954020 |
agttttataggtcaattagtcaacac |
39954045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 15 - 470
Target Start/End: Original strand, 196278 - 196741
Alignment:
| Q |
15 |
catccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcatatgacataaacctacttaacttgtgc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
196278 |
catccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatgcttagctgatgtcatatgacgtaaacctacttaactcgtgc |
196377 |
T |
|
| Q |
115 |
agataatcttact-------------------aacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaa |
195 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
196378 |
agataaccttacttgtgcagcatagttttactaacaaaacaagttaaaatgattacacacataaacaataaagtaacataa-----------ttcagaaa |
196466 |
T |
|
| Q |
196 |
agttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcccagcttgcttcttagctccatgaacttggcactaggaagtgcttt |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196467 |
agttttataggtcaattagtcaacactcctccttaaaacttttttgaaatactcctagcttgcttcttagctccatgaacttggcactaggaagtgcttt |
196566 |
T |
|
| Q |
296 |
tgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattgata |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196567 |
tgttaaaatgtctgccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattgata |
196666 |
T |
|
| Q |
396 |
tgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaatt |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
196667 |
tgctttgttcttccatgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaatt |
196741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 200657 - 200872
Alignment:
| Q |
15 |
catccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcatatgacataaacctacttaacttgtgc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
200657 |
catccatacatccttcttacatacttatagccaaatacttagtaatgactcagcctatgcttagctgatgtcatatgaggtaaacctacttaacttgtgc |
200756 |
T |
|
| Q |
115 |
agataa-------------------tcttactaacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaa |
195 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
200757 |
agataaccttacttgtgcagcatagttttactaacaaaacaagttaaaatgattacacacataaacaataaagtaacata-----------attcagaaa |
200845 |
T |
|
| Q |
196 |
agttttataggtcaattagtcaacact |
222 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
200846 |
agttttataggtcaattagtcaacact |
200872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 15 - 220
Target Start/End: Complemental strand, 1330793 - 1330569
Alignment:
| Q |
15 |
catccatacatccttcttacatacttatagccaaatactaagtaatgactcagcctatgcttagctgatgtcatatgacataaacctacttaacttgtgc |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||| | |||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1330793 |
catccttacatccttcttacatacttatagtcaaatacttactaatgactcaacctatactttgctgatgtcatatgacataaacctacttaacttgtgc |
1330694 |
T |
|
| Q |
115 |
agataa-------------------tcttactaacaaaacaagttaaaataattacacacataagcaataaagtaacataaacaataaagtattcagaaa |
195 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
1330693 |
agataacattacttgtgcagtatagttttactaacaaaacaagttaaaatgattacacacataagcaatagagtaacataaacaataaagtattcagaca |
1330594 |
T |
|
| Q |
196 |
agttttataggtcaattagtcaaca |
220 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
1330593 |
agttttataggtcaattagtcaaca |
1330569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1453 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold1453
Description:
Target: scaffold1453; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 54 - 1
Alignment:
| Q |
15 |
catccatacatccttcttacatacttatagccaaatactaagtaatgactcagc |
68 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
54 |
catccatacatccttcttacatacttatagccaaatacttagtaatgactcagc |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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