View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4886_high_3 (Length: 465)
Name: NF4886_high_3
Description: NF4886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4886_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 455
Target Start/End: Complemental strand, 41135536 - 41135101
Alignment:
| Q |
18 |
gaaagcactgctaaagtgcgtatgtcaaggctccaactccttaccaccaagtatgaaaaccttagaatgaatgatgatgaaaccattcatgactttcaca |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41135536 |
gaaagcaccgctaaagtgcgtatgtcaaggctccaactccttactaccaagtatgaaaaccttagaatgaatgatgatgaaaccattcatgactttcaca |
41135437 |
T |
|
| Q |
118 |
tgagtattataaatattgctaatactttctgtgccttgggagaaacgatgtcagaagaaaaactggttaagaaaatcctaatatccttactcaagaagta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
41135436 |
tgagtattataaatattgctaatactttccgtgccttgggagaaacgatgtcagaagaaaaactggttaagaaaatcctaatatctttacttaagaagta |
41135337 |
T |
|
| Q |
218 |
tggcatgaaagtcacaacaattgaggaagccagaaacttaagcaacatgaaggtagatgaactcattgggttaattagataaacttaatattaaataata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41135336 |
tggcatgaaagtcacaacaattgaggaagccaaaaacttaagcaacatgaaggtagatgaactcattgggttaattagataaacttaatattaaataata |
41135237 |
T |
|
| Q |
318 |
agttttatcgagtgtgcatttaattcaaaggatatttttatacttttcaacacaacaacannnnnnnnnnnatttctctcttcttctatttctactgtac |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
41135236 |
agttttatcgagtgtgcatttaattcaaaggatatttttatactgttcaacacaacaaca--tttttttttatttctctcttcttctatttctattgtac |
41135139 |
T |
|
| Q |
418 |
taaataatacattaaatttagggttaattatgtctctg |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41135138 |
taaataatacattaaatttagggttaattatgtctctg |
41135101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 248
Target Start/End: Complemental strand, 22979208 - 22978989
Alignment:
| Q |
29 |
taaagtgcgtatgtcaaggctccaactccttaccaccaagtatgaaaaccttagaatgaatgatgatgaaaccattcatgactttcacatgagtattata |
128 |
Q |
| |
|
||||||||| ||||||| |||| | |||||||| || || | ||| || || | ||||| ||| ||||| |||| ||||| ||||| |||| |||| | |
|
|
| T |
22979208 |
taaagtgcgaatgtcaaagctctagctccttactactaaatttgagaatctcaagatgaaagattatgaatccatacatgaatttcatatgaatattctt |
22979109 |
T |
|
| Q |
129 |
aatattgctaatactttctgtgccttgggagaaacgatgtcagaagaaaaactggttaagaaaatcctaatatccttactcaagaagtatggcatgaaag |
228 |
Q |
| |
|
| ||||||||||| | |||| || | ||||| ||||||||| || || ||||||| |||||||| | ||| || | ||||| | || |||||||| |
|
|
| T |
22979108 |
gaaattgctaatacatcaagtgctttagaagaaaagatgtcagatgagaagctggttagaaaaatccttacatctttgcccaagagatttgacatgaaag |
22979009 |
T |
|
| Q |
229 |
tcacaacaattgaggaagcc |
248 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
22979008 |
tcacaaccattgaggaagcc |
22978989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 9e-68; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 24 - 286
Target Start/End: Complemental strand, 17402385 - 17402124
Alignment:
| Q |
24 |
actgctaaagtgcgtatgtcaaggctccaactccttaccaccaagtatgaaaaccttagaatgaatgatgatgaaaccattcatgactttcacatgagta |
123 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||| ||||| | ||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
17402385 |
actgctaaagtgtgtatgtcaaggctccagctccttactaccaattttgaaaaccttagaatgaattatgatgaaaccattcataactttcacatgagta |
17402286 |
T |
|
| Q |
124 |
ttataaatattgctaatactttctgtgccttgggagaaacgatgtcagaagaaaaactggttaagaaaatcctaatatccttactcaagaagtatggcat |
223 |
Q |
| |
|
| | |||||| |||||| | ||||||||||||||||||||| | ||||||||||||||| |||||| |||| ||||||||| ||||| |||| ||| |
|
|
| T |
17402285 |
tccttgatattgttaatacatcacgtgccttgggagaaacgatgttaaaagaaaaactggttaggaaaattctaagatccttacttaagaaatatgacat |
17402186 |
T |
|
| Q |
224 |
gaaagtcacaacaattgaggaagccagaaacttaagcaacatgaaggtagatgaactcattgg |
286 |
Q |
| |
|
||||||| || |||| |||||||| | || ||||||||||||||||||||||||||||||| |
|
|
| T |
17402185 |
gaaagtc-taaaaattaaggaagcccaagacataagcaacatgaaggtagatgaactcattgg |
17402124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 156 - 288
Target Start/End: Original strand, 23317104 - 23317236
Alignment:
| Q |
156 |
ggagaaacgatgtcagaagaaaaactggttaagaaaatcctaatatccttactcaagaagtatggcatgaaagtcacaacaattgaggaagccagaaact |
255 |
Q |
| |
|
||||||| |||||||||||||||||| |||| |||||||| | |||||||| ||||||||||| |||||||||||||| ||| ||||||| | || |
|
|
| T |
23317104 |
ggagaaaagatgtcagaagaaaaactagttagaaaaatcctcagatccttacccaagaagtatgacatgaaagtcacaatcattacggaagcctaagaca |
23317203 |
T |
|
| Q |
256 |
taagcaacatgaaggtagatgaactcattgggt |
288 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||| |
|
|
| T |
23317204 |
taagcaacatgaaggtaaatgaagtcattgggt |
23317236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 288
Target Start/End: Complemental strand, 19563798 - 19563594
Alignment:
| Q |
84 |
atgaatgatgatgaaaccattcatgactttcacatgagtattataaatattgctaatactttctgtgccttgggagaaacgatgtcagaagaaaaactgg |
183 |
Q |
| |
|
||||| ||| ||||| |||| ||||| |||||||| |||||| | | ||||||||||| | |||| || ||||||| |||| || |||| || |||| |
|
|
| T |
19563798 |
atgaaagattatgaatccatacatgattttcacattagtattcttgacattgctaatacatgaagtgcgttaggagaaaggatgccaaaagagaagctgg |
19563699 |
T |
|
| Q |
184 |
ttaagaaaatcctaatatccttactcaagaagtatggcatgaaagtcacaacaattgaggaagccagaaacttaagcaacatgaaggtagatgaactcat |
283 |
Q |
| |
|
||| |||||||| ||||| || ||||| | || ||||||||||||||| |||||||||||| | || | |||||||||||||| |||||||| || |
|
|
| T |
19563698 |
ttagaaaaatcctcatatctttgtccaagagatttgacatgaaagtcacaaccattgaggaagcccaagacattagcaacatgaaggtggatgaactaat |
19563599 |
T |
|
| Q |
284 |
tgggt |
288 |
Q |
| |
|
||||| |
|
|
| T |
19563598 |
tgggt |
19563594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 91 - 288
Target Start/End: Original strand, 6095850 - 6096047
Alignment:
| Q |
91 |
atgatgaaaccattcatgactttcacatgagtattataaatattgctaatactttctgtgccttgggagaaacgatgtcagaagaaaaactggttaagaa |
190 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| ||| | ||||||||||||| | ||||||||||||||| |||||| | | | || ||| |||| |
|
|
| T |
6095850 |
atgatgaatccattcatgaatttcacatgagaattcttgatattgctaatacatcaagtgccttgggagaaaggatgtctggaaagaagctgattaaatt |
6095949 |
T |
|
| Q |
191 |
aatcctaatatccttactcaagaagtatggcatgaaagtcacaacaattgaggaagccagaaacttaagcaacatgaaggtagatgaactcattgggt |
288 |
Q |
| |
|
| | | ||| ||| |||||||| || |||||||||||||| ||||| |||||| | || |||||||||||||||| |||||||| ||||||| |
|
|
| T |
6095950 |
ttttttcagatctctacccaagaagtttgatatgaaagtcacaaccattgaagaagcccaagacataagcaacatgaaggtggatgaacttattgggt |
6096047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 29 - 288
Target Start/End: Complemental strand, 9297151 - 9296892
Alignment:
| Q |
29 |
taaagtgcgtatgtcaaggctccaactccttaccaccaagtatgaaaaccttagaatgaatgatgatgaaaccattcatgactttcacatgagtattata |
128 |
Q |
| |
|
||||||||| ||||||| |||||||||||| || || || | ||| || || || ||||| ||| ||||| |||| ||||||||| |||| |||| | |
|
|
| T |
9297151 |
taaagtgcgaatgtcaaagctccaactcctcactactaaatttgagaatctcaggatgaaagatcatgaatccatacatgacttttgtatgaatattctt |
9297052 |
T |
|
| Q |
129 |
aatattgctaatactttctgtgccttgggagaaacgatgtcagaagaaaaactggttaagaaaatcctaatatccttactcaagaagtatggcatgaaag |
228 |
Q |
| |
|
| ||||||||||| | |||| || || |||| ||||||||| || || ||||||| |||||||| | ||| || | ||||| | || |||||||| |
|
|
| T |
9297051 |
gaaattgctaatacatgaagtgctttaggggaaaagatgtcagacgagaagctggttagaaaaatcctcagatctttgcccaagagatttgacatgaaag |
9296952 |
T |
|
| Q |
229 |
tcacaacaattgaggaagccagaaacttaagcaacatgaaggtagatgaactcattgggt |
288 |
Q |
| |
|
||||| | |||||||||| | | || | |||||||||||||| |||||||| ||||||| |
|
|
| T |
9296951 |
tcacagccattgaggaagaccaagacattagcaacatgaaggtggatgaactaattgggt |
9296892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University