View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4886_low_18 (Length: 249)
Name: NF4886_low_18
Description: NF4886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4886_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 234
Target Start/End: Original strand, 5476073 - 5476300
Alignment:
| Q |
7 |
atacttgtattagtagtgcttatgctataaatgtcaaattaattatttatccaatcggaaactttgtaggggactgatgaaacagaggcgggaaatagga |
106 |
Q |
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|||||| |||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5476073 |
atacttatattagtagtgcttatgctatatatgtctaattgattatttatccaatcggaaactttgtaggggactgatgaaacagaggcaggaaatagga |
5476172 |
T |
|
| Q |
107 |
ttagtgagttacctgactgcatactcctccacatgatgagttttcttgaagtacaagacgctgttcggacttgcatcttgtctaaacgatggaaggatct |
206 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5476173 |
ttagtgagttacctgactgcatactcctccacataatgagttttcttgaagcacgagatgctgttcggacttgcatcttgtctaaacgatggaaggatct |
5476272 |
T |
|
| Q |
207 |
ttgcaaacgtctcactactctcacatat |
234 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
5476273 |
ttgcaaacgtctcactactctcacatat |
5476300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 7 - 234
Target Start/End: Original strand, 8403528 - 8403761
Alignment:
| Q |
7 |
atacttgtattagtagtgcttatgctataaatgtcaaattaattatttatccaatcggaaactttgtaggggactgatgaaacagaggcgg------gaa |
100 |
Q |
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| T |
8403528 |
atacttatattcgtagtgcttatgctataaatgtttaattaattatttatccaatgagaaactttgtagggaactgaagaaacagaggaaaatagaagaa |
8403627 |
T |
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| Q |
101 |
ataggattagtgagttacctgactgcatactcctccacatgatgagttttcttgaagtacaagacgctgttcggacttgcatcttgtctaaacgatggaa |
200 |
Q |
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| T |
8403628 |
ataggattggtgagttacctgactgcatactcctccacataatgagttttcttgaagcacgagacgctgttcggacttgcatcttgtctaaacgatggaa |
8403727 |
T |
|
| Q |
201 |
ggatctttgcaaacgtctcactactctcacatat |
234 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
8403728 |
ggatctttgcaaacgtctcactactctcgcatat |
8403761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 98 - 234
Target Start/End: Complemental strand, 9139103 - 9138967
Alignment:
| Q |
98 |
gaaataggattagtgagttacctgactgcatactcctccacatgatgagttttcttgaagtacaagacgctgttcggacttgcatcttgtctaaacgatg |
197 |
Q |
| |
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||||||||||| ||||||| |||||||||||| | |||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||| || |
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| T |
9139103 |
gaaataggatttgtgagttgcctgactgcatattgctccacatattgagttttcttgaagcacaagatgctgttcggacttgcatcttgtctaaacggtg |
9139004 |
T |
|
| Q |
198 |
gaaggatctttgcaaacgtctcactactctcacatat |
234 |
Q |
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|||||||||||||||| | |||||||||||||||||| |
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| T |
9139003 |
gaaggatctttgcaaatgcctcactactctcacatat |
9138967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 98 - 234
Target Start/End: Complemental strand, 8359663 - 8359527
Alignment:
| Q |
98 |
gaaataggattagtgagttacctgactgcatactcctccacatgatgagttttcttgaagtacaagacgctgttcggacttgcatcttgtctaaacgatg |
197 |
Q |
| |
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|||||| ||| ||| ||||||||||||||||||| |||||||| ||||||||| | ||| | |||||||||||| ||||||||||||||||||||||| |
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| T |
8359663 |
gaaatatgatcagtaagttacctgactgcatactgctccacataatgagttttttgaaagctcgagacgctgttcgaacttgcatcttgtctaaacgatg |
8359564 |
T |
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| Q |
198 |
gaaggatctttgcaaacgtctcactactctcacatat |
234 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
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| T |
8359563 |
gaaggatctttgcaaacgtctccctactctcacatat |
8359527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 79 - 234
Target Start/End: Original strand, 8410656 - 8410812
Alignment:
| Q |
79 |
actgatgaaacagaggcgggaaa-taggattagtgagttacctgactgcatactcctccacatgatgagttttcttgaagtacaagacgctgttcggact |
177 |
Q |
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||||| || ||||| |||||||| ||||||||||||||| ||||||||| || | ||| | || ||||||||||||||| || ||| |||||||||||| |
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| T |
8410656 |
actgaagacacagatgcgggaaaataggattagtgagttgcctgactgcttattgctctagatattgagttttcttgaagcacgagatgctgttcggact |
8410755 |
T |
|
| Q |
178 |
tgcatcttgtctaaacgatggaaggatctttgcaaacgtctcactactctcacatat |
234 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
8410756 |
tgcatcttgtctaaacggtggaaggatctttgcaaacgcctcactactctcacatat |
8410812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 98 - 234
Target Start/End: Complemental strand, 43144976 - 43144840
Alignment:
| Q |
98 |
gaaataggattagtgagttacctgactgcatactcctccacatgatgagttttcttgaagtacaagacgctgttcggacttgcatcttgtctaaacgatg |
197 |
Q |
| |
|
||||| ||||||||||||| || ||||||||||| ||||| || |||||||||||||||| || ||||| |||||| ||||||||||||||||| ||||| |
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| T |
43144976 |
gaaattggattagtgagttgcccgactgcatactgctccatataatgagttttcttgaagcacgagacgttgttcgaacttgcatcttgtctaagcgatg |
43144877 |
T |
|
| Q |
198 |
gaaggatctttgcaaacgtctcactactctcacatat |
234 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||| |
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| T |
43144876 |
gaaggatctttgcaaacgtgtcactactctcaaatat |
43144840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 99 - 234
Target Start/End: Complemental strand, 8036498 - 8036363
Alignment:
| Q |
99 |
aaataggattagtgagttacctgactgcatactcctccacatgatgagttttcttgaagtacaagacgctgttcggacttgcatcttgtctaaacgatgg |
198 |
Q |
| |
|
|||||||||||||||||| |||||||||||| | |||||||| |||| |||||||||| |||||| ||||||| |||||| |||||||||||||| ||| |
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| T |
8036498 |
aaataggattagtgagttgcctgactgcatattgctccacatactgaggtttcttgaagcacaagatgctgttcagacttgtatcttgtctaaacggtgg |
8036399 |
T |
|
| Q |
199 |
aaggatctttgcaaacgtctcactactctcacatat |
234 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
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| T |
8036398 |
aaggatctttgcaaacgcgtcactactctcacatat |
8036363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 99 - 234
Target Start/End: Original strand, 8416330 - 8416465
Alignment:
| Q |
99 |
aaataggattagtgagttacctgactgcatactcctccacatgatgagttttcttgaagtacaagacgctgttcggacttgcatcttgtctaaacgatgg |
198 |
Q |
| |
|
|||||||||||||||||| ||||||||| || | ||||| || ||||||||||||||| || ||| |||||||||||||| |||||||||||||| ||| |
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| T |
8416330 |
aaataggattagtgagttgcctgactgcttattgctccatatattgagttttcttgaagcacgagatgctgttcggacttgtatcttgtctaaacggtgg |
8416429 |
T |
|
| Q |
199 |
aaggatctttgcaaacgtctcactactctcacatat |
234 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
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| T |
8416430 |
aaggatctttgcaaacgcctcactactctcacatat |
8416465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 98 - 234
Target Start/End: Complemental strand, 8356617 - 8356481
Alignment:
| Q |
98 |
gaaataggattagtgagttacctgactgcatactcctccacatgatgagttttcttgaagtacaagacgctgttcggacttgcatcttgtctaaacgatg |
197 |
Q |
| |
|
||||||||||||||||||| || |||||| || | ||||||| ||||||||||||||| | |||| | |||||||||||||||||||||||||||||| |
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| T |
8356617 |
gaaataggattagtgagttgccagactgcttattggtccacatattgagttttcttgaagcagaagatgttgttcggacttgcatcttgtctaaacgatg |
8356518 |
T |
|
| Q |
198 |
gaaggatctttgcaaacgtctcactactctcacatat |
234 |
Q |
| |
|
|||||||||||||||||| ||| ||| |||||||||| |
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|
| T |
8356517 |
gaaggatctttgcaaacgcctccctattctcacatat |
8356481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 101 - 234
Target Start/End: Complemental strand, 8041913 - 8041780
Alignment:
| Q |
101 |
ataggattagtgagttacctgactgcatactcctccacatgatgagttttcttgaagtacaagacgctgttcggacttgcatcttgtctaaacgatggaa |
200 |
Q |
| |
|
||||||||||||| || |||||||||||| | ||||||| || |||||||||||| || ||| |||||||||||||| |||||||||||||| ||||| |
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| T |
8041913 |
ataggattagtgatttgcctgactgcatattgctccacacattgggttttcttgaagcacgagatgctgttcggacttgtatcttgtctaaacggtggaa |
8041814 |
T |
|
| Q |
201 |
ggatctttgcaaacgtctcactactctcacatat |
234 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
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|
| T |
8041813 |
ggatctttgcaaacgcgtcactactctcacatat |
8041780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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