View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4886_low_20 (Length: 238)

Name: NF4886_low_20
Description: NF4886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4886_low_20
NF4886_low_20
[»] chr4 (4 HSPs)
chr4 (77-223)||(46033588-46033734)
chr4 (18-76)||(3941671-3941729)
chr4 (18-76)||(3946070-3946128)
chr4 (38-76)||(22804930-22804968)
[»] chr7 (4 HSPs)
chr7 (77-223)||(39487466-39487611)
chr7 (1-76)||(39949304-39949379)
chr7 (1-76)||(39953696-39953771)
chr7 (91-168)||(5807207-5807284)
[»] scaffold1453 (1 HSPs)
scaffold1453 (1-76)||(105-180)
[»] chr8 (5 HSPs)
chr8 (5-76)||(30045405-30045476)
chr8 (5-76)||(30049808-30049879)
chr8 (1-73)||(7162755-7162828)
chr8 (38-76)||(44732162-44732200)
chr8 (38-76)||(44734475-44734513)
[»] chr3 (5 HSPs)
chr3 (1-76)||(22361294-22361369)
chr3 (1-74)||(22365681-22365754)
chr3 (1-76)||(36028807-36028882)
chr3 (38-78)||(5353342-5353382)
chr3 (38-76)||(28784833-28784871)
[»] chr5 (4 HSPs)
chr5 (1-76)||(196152-196227)
chr5 (29-76)||(200538-200585)
chr5 (38-76)||(32800637-32800675)
chr5 (38-75)||(32798325-32798362)
[»] chr2 (3 HSPs)
chr2 (21-76)||(1330864-1330919)
chr2 (38-76)||(45336578-45336616)
chr2 (38-76)||(45338890-45338928)
[»] chr1 (1 HSPs)
chr1 (38-76)||(1550476-1550514)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 46033588 - 46033734
Alignment:
Q  77 ttatctaaattctggtggggttctacagagcaacaaaggaaaattcactggatgagttgggatcgattaggaagagcaaaaagcaaaggaggacttggct 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46033588 ttatctaaattctggtggggttctacagagcaacaaaggaaaattcactggatgagttgggatcggttaggaagagcaaaaagcaaaggaggacttggct 46033687  T
Q  177 tcggaggcttcagtgattttaacaaggcgcttctagggaagcaatgt 223  Q
    || ||||||||||||||||||||||||| ||||||||||||||||||    
T  46033688 tcagaggcttcagtgattttaacaaggcacttctagggaagcaatgt 46033734  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 3941671 - 3941729
Alignment:
Q  18 ctaatttctgttttctgtttttgagcttattgcttctgctgccattacaaaagctaaca 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3941671 ctaatttctgttttctgtttttgagcttattgcttctgctgccattacaaaagctaaca 3941729  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 3946070 - 3946128
Alignment:
Q  18 ctaatttctgttttctgtttttgagcttattgcttctgctgccattacaaaagctaaca 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3946070 ctaatttctgttttctgtttttgagcttattgcttctgctgccattacaaaagctaaca 3946128  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 22804930 - 22804968
Alignment:
Q  38 ttgagcttattgcttctgctgccattacaaaagctaaca 76  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  22804930 ttgagcttattgcttctgctgcctttgcaaaagctaaca 22804968  T

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Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 39487466 - 39487611
Alignment:
Q  77 ttatctaaattctggtggggttctacagagcaacaaaggaaaattcactggatgagttgggatcgattaggaagagcaaaaagcaaaggaggacttggct 176  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39487466 ttatctaaattttggtggggttcta-agagcaacaaaggaaaattcactggatgagttgggatcggttaggaagagcaaaaagcaaaggaggacttggct 39487564  T
Q  177 tcggaggcttcagtgattttaacaaggcgcttctagggaagcaatgt 223  Q
    || ||||||||||||||||||||||||||||||||||||||||||||    
T  39487565 tcagaggcttcagtgattttaacaaggcgcttctagggaagcaatgt 39487611  T

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Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 39949379 - 39949304
Alignment:
Q  1 tccattttgtttcttcgctaatttctgttttctgtttttgagcttattgcttctgctgccattacaaaagctaaca 76  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39949379 tccatttcttttcttctctaatttctgttttctgtttttgagcttattgcttctgctgccattacaaaagctaaca 39949304  T

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Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 39953771 - 39953696
Alignment:
Q  1 tccattttgtttcttcgctaatttctgttttctgtttttgagcttattgcttctgctgccattacaaaagctaaca 76  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39953771 tccatttcttttcttctctaatttctgttttctgtttttgagcttattgcttctgctgccattacaaaagctaaca 39953696  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 5807284 - 5807207
Alignment:
Q  91 gtggggttctacagagcaacaaaggaaaattcactggatgagttgggatcgattaggaagagcaaaaagcaaaggagg 168  Q
    |||||| |||||||||||||| ||||||||||| ||||| ||||||||   |||||| ||||||||| | ||||||||    
T  5807284 gtggggatctacagagcaacagaggaaaattcattggataagttgggacaaattagggagagcaaaaggaaaaggagg 5807207  T

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Target: scaffold1453 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold1453
Description:

Target: scaffold1453; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 105 - 180
Alignment:
Q  1 tccattttgtttcttcgctaatttctgttttctgtttttgagcttattgcttctgctgccattacaaaagctaaca 76  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  105 tccatttcttttcttctctaatttctgttttctgtttttgagcttattgcttctgctgccattacaaaagctaaca 180  T

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Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 30045405 - 30045476
Alignment:
Q  5 ttttgtttcttcgctaatttctgttttctgtttttgagcttattgcttctgctgccattacaaaagctaaca 76  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30045405 ttttttttcttctctaatttctgttttctgtttttgagcttattgcttctgctgccattacaaaagctaaca 30045476  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 30049808 - 30049879
Alignment:
Q  5 ttttgtttcttcgctaatttctgttttctgtttttgagcttattgcttctgctgccattacaaaagctaaca 76  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30049808 ttttttttcttctctaatttctgttttctgtttttgagcttattgcttctgctgccattacaaaagctaaca 30049879  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 7162755 - 7162828
Alignment:
Q  1 tccattttgtttcttcgctaattt-ctgttttctgtttttgagcttattgcttctgctgccattacaaaagcta 73  Q
    |||||||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7162755 tccatttcttttcttctctaattttctgttttctgtttttgagcttattgcttctgctgccattacaaaagcta 7162828  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 44732162 - 44732200
Alignment:
Q  38 ttgagcttattgcttctgctgccattacaaaagctaaca 76  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  44732162 ttgagcttattgcttctgctgcctttgcaaaagctaaca 44732200  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 44734475 - 44734513
Alignment:
Q  38 ttgagcttattgcttctgctgccattacaaaagctaaca 76  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  44734475 ttgagcttattgcttctgctgcctttgcaaaagctaaca 44734513  T

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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 22361294 - 22361369
Alignment:
Q  1 tccattttgtttcttcgctaatttctgttttctgtttttgagcttattgcttctgctgccattacaaaagctaaca 76  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22361294 tccatttcttttcttctctaatttctgttttctgtttttgagcttattgcttctgctgccattacaaaagctaaca 22361369  T

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Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 22365681 - 22365754
Alignment:
Q  1 tccattttgtttcttcgctaatttctgttttctgtttttgagcttattgcttctgctgccattacaaaagctaa 74  Q
    |||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22365681 tccatttcttttcttctctaatttctgttttctgtttttgagcttattgcttctgctgccattacaaaagctaa 22365754  T

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Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 36028882 - 36028807
Alignment:
Q  1 tccattttgtttcttcgctaatttctgttttctgtttttgagcttattgcttctgctgccattacaaaagctaaca 76  Q
    |||||||  ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36028882 tccatttcttttcttctctaatttctgttttctatttttgagcttattgcttctgctgccattacaaaagctaaca 36028807  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 78
Target Start/End: Complemental strand, 5353382 - 5353342
Alignment:
Q  38 ttgagcttattgcttctgctgccattacaaaagctaacatt 78  Q
    ||||||||||||||||||||||| || ||||||||||||||    
T  5353382 ttgagcttattgcttctgctgcctttgcaaaagctaacatt 5353342  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 28784833 - 28784871
Alignment:
Q  38 ttgagcttattgcttctgctgccattacaaaagctaaca 76  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  28784833 ttgagcttattgcttctgctgcctttgcaaaagctaaca 28784871  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 196227 - 196152
Alignment:
Q  1 tccattttgtttcttcgctaatttctgttttctgtttttgagcttattgcttctgctgccattacaaaagctaaca 76  Q
    |||||||  ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  196227 tccatttcttttcttctctaatttatgttttctgtttttgagcttattgcttctgctgccattacaaaagctaaca 196152  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 200585 - 200538
Alignment:
Q  29 tttctgtttttgagcttattgcttctgctgccattacaaaagctaaca 76  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  200585 tttctgtttttgagcttattgcttctgctaccattacaaaagctaaca 200538  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 32800637 - 32800675
Alignment:
Q  38 ttgagcttattgcttctgctgccattacaaaagctaaca 76  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  32800637 ttgagcttattgcttctgctgcctttgcaaaagctaaca 32800675  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 32798325 - 32798362
Alignment:
Q  38 ttgagcttattgcttctgctgccattacaaaagctaac 75  Q
    ||||||||||||||||||||||| || |||||||||||    
T  32798325 ttgagcttattgcttctgctgcctttgcaaaagctaac 32798362  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 1330864 - 1330919
Alignment:
Q  21 atttctgttttctgtttttgagcttattgcttctgctgccattacaaaagctaaca 76  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1330864 atttctgttttctgtttttgagcttattgtttctgctgccattacaaaagctaaca 1330919  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 45336578 - 45336616
Alignment:
Q  38 ttgagcttattgcttctgctgccattacaaaagctaaca 76  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  45336578 ttgagcttattgcttctgctgcctttgcaaaagctaaca 45336616  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 45338890 - 45338928
Alignment:
Q  38 ttgagcttattgcttctgctgccattacaaaagctaaca 76  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  45338890 ttgagcttattgcttctgctgcctttgcaaaagctaaca 45338928  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 1550476 - 1550514
Alignment:
Q  38 ttgagcttattgcttctgctgccattacaaaagctaaca 76  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  1550476 ttgagcttattgcttctgctgcctttgcaaaagctaaca 1550514  T

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