View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4886_low_4 (Length: 456)
Name: NF4886_low_4
Description: NF4886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4886_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 40432611 - 40432916
Alignment:
| Q |
1 |
tagcatagcaaaccatttgttagtgcagaatcagaagttaaagcggccttcaatatgttcaaacactgcaccaacaaaaccattagatataggcaataat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40432611 |
tagcatagcaaaccatttgttagtgcagaatctgaagtcaaagcggccttcaatatgttcaaacactgcaccaacaaaaccattagaaataggcaataat |
40432710 |
T |
|
| Q |
101 |
gcattcaattattataccaaacacataacaatgcattggtgatagaggttttgattttcttacctcttttagcccaaaagtgacggccttgttcttcaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40432711 |
gcattcaattattataccaaacacataacaatgcattggtgatagaggttttgattttcttacctcttttagcccaaaagtgacggccttgttcttcacg |
40432810 |
T |
|
| Q |
201 |
tcatttagaggaatctccagagacatcaaaaactcgaaatctgaaattgggcaagatggtttgaagaccaactcatctgtaaccaaaaaggttctatgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40432811 |
tcatttagaggaatctccagagacatcaaaaactcgaaatctgaaattgggcaagatggtttgaagaccaactcatctgtaaccaaaaaggttctatgtt |
40432910 |
T |
|
| Q |
301 |
ccttta |
306 |
Q |
| |
|
|||||| |
|
|
| T |
40432911 |
ccttta |
40432916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 299 - 456
Target Start/End: Original strand, 40432932 - 40433089
Alignment:
| Q |
299 |
ttcctttagatggtatggaataatcgattaagctcagttttctaacctttttctcaagaatcctgaatacatcggttatgtaaaattctccgtggtcgat |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
40432932 |
ttcctttagatggtatggaataatcgattaagctcagttttctaacctttttctcaagaatcttgaatacatcggttatgtaaaattctccatggccgat |
40433031 |
T |
|
| Q |
399 |
actttctttgaaggtattaccttgataataacaataatacggcatcttttcttcaatt |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40433032 |
actttctttgaaggtattaccttgataataacaataatacggcatcttttcttcaatt |
40433089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University