View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4886_low_6 (Length: 386)

Name: NF4886_low_6
Description: NF4886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4886_low_6
NF4886_low_6
[»] chr8 (3 HSPs)
chr8 (58-244)||(1183160-1183342)
chr8 (245-371)||(1182780-1182906)
chr8 (5-56)||(1183580-1183631)
[»] chr4 (2 HSPs)
chr4 (245-356)||(26076241-26076352)
chr4 (185-237)||(5706782-5706834)
[»] chr2 (1 HSPs)
chr2 (245-356)||(12370656-12370767)
[»] chr1 (1 HSPs)
chr1 (260-356)||(4958602-4958698)
[»] chr3 (3 HSPs)
chr3 (245-356)||(32368621-32368732)
chr3 (185-237)||(18641439-18641491)
chr3 (83-128)||(32368156-32368201)
[»] chr7 (2 HSPs)
chr7 (245-332)||(5243074-5243161)
chr7 (58-143)||(5243516-5243601)
[»] chr6 (1 HSPs)
chr6 (265-332)||(9636620-9636687)
[»] chr5 (1 HSPs)
chr5 (236-297)||(33717078-33717140)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 9e-89; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 58 - 244
Target Start/End: Complemental strand, 1183342 - 1183160
Alignment:
Q  58 tgtcacttgttccatgatgaaatataacctagtttcaacgtgtttacttcttccatgtgctataggattcttagctagattaatagcttatttgtttgtt 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||    
T  1183342 tgtcacttgttccatgatgaaatataacctagtttcaacgtgtttacttcttccatgtgctataggattcttagctagattaatagcttatt----tgtt 1183247  T
Q  158 attaaatttcagcttcaaaggattttccacttcacagtttagctctttcatcactgtatccagccaaattgcttgacaagctgcaaa 244  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1183246 attaaatttcagcttcaaaggattttctacttcacagtttagctctttcatcactgtatccagccaaattgcttgacaagctgcaaa 1183160  T

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Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 245 - 371
Target Start/End: Complemental strand, 1182906 - 1182780
Alignment:
Q  245 agatgagattttctaggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaacta 344  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1182906 agatgagatttcctaggatcattcatgtatctactgatgatacttaccgcaaagcatatatcaggtctgttattgcataggcatctcagagatccaacta 1182807  T
Q  345 tcggtttgaattatgtagcttctactt 371  Q
    |||||||||||||||||||||||||||    
T  1182806 tcggtttgaattatgtagcttctactt 1182780  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 1183631 - 1183580
Alignment:
Q  5 gagagagaagaaagtgttagaagtttgttatggttttcattaattaatgaaa 56  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1183631 gagagagaagaaagtgtttgaagtttgttatggttttcattaattaatgaaa 1183580  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 245 - 356
Target Start/End: Complemental strand, 26076352 - 26076241
Alignment:
Q  245 agatgagattttctaggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaacta 344  Q
    |||||||| || || |||||||||||| |||||||| | |||||||| |||||||||||||| |||||||| ||||||| |||||| || ||||| ||||    
T  26076352 agatgagacttccttggatcattcatgaatctactgattatacttactgcaaagcatatatctggtctgttgttgcataagtatcttagtgatcccacta 26076253  T
Q  345 tcggtttgaatt 356  Q
    || |||||||||    
T  26076252 tctgtttgaatt 26076241  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 5706834 - 5706782
Alignment:
Q  185 cacttcacagtttagctctttcatcactgtatccagccaaattgcttgacaag 237  Q
    ||||||||| || |||||||||||||||| ||||||||| | |||||||||||    
T  5706834 cacttcacacttgagctctttcatcactgaatccagccataatgcttgacaag 5706782  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 245 - 356
Target Start/End: Complemental strand, 12370767 - 12370656
Alignment:
Q  245 agatgagattttctaggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaacta 344  Q
    |||||||| || || |||||||||||| |||||||| |||||||||| |||||||||||||| |||||| | ||||||| ||||||||| ||||| ||||    
T  12370767 agatgagacttccttggatcattcatgcatctactgatgatacttactgcaaagcatatatctggtctgctgttgcataagtatctcagtgatcccacta 12370668  T
Q  345 tcggtttgaatt 356  Q
    |  |||||||||    
T  12370667 tatgtttgaatt 12370656  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 260 - 356
Target Start/End: Original strand, 4958602 - 4958698
Alignment:
Q  260 ggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaactatcggtttgaatt 356  Q
    |||||||||||| |||||||| |||||||||| |||||||||||||  |||||||| ||||||| ||||||||  ||||| |||||| |||||||||    
T  4958602 ggatcattcatgaatctactgatgatacttactgcaaagcatatatatggtctgttgttgcataagtatctcaatgatcccactatctgtttgaatt 4958698  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 356
Target Start/End: Original strand, 32368621 - 32368732
Alignment:
Q  245 agatgagattttctaggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaacta 344  Q
    ||||||||||| || |||||||||||| | |||| | |||||||||| |||||| ||||||| ||| |||| ||||||| |||  |||  ||||| ||||    
T  32368621 agatgagatttccttggatcattcatgaacctaccgatgatacttactgcaaaggatatatctggtttgttgttgcataagtacatcaatgatcccacta 32368720  T
Q  345 tcggtttgaatt 356  Q
    || |||||||||    
T  32368721 tctgtttgaatt 32368732  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 237
Target Start/End: Original strand, 18641439 - 18641491
Alignment:
Q  185 cacttcacagtttagctctttcatcactgtatccagccaaattgcttgacaag 237  Q
    ||||||||| || |||||||||||||||| ||||||||| | |||||||||||    
T  18641439 cacttcacacttgagctctttcatcactgaatccagccataatgcttgacaag 18641491  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 32368156 - 32368201
Alignment:
Q  83 aacctagtttcaacgtgtttacttcttccatgtgctataggattct 128  Q
    ||||||||||||| ||||||||| || ||||||||||| |||||||    
T  32368156 aacctagtttcaatgtgtttactcctgccatgtgctattggattct 32368201  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 332
Target Start/End: Complemental strand, 5243161 - 5243074
Alignment:
Q  245 agatgagattttctaggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctca 332  Q
    |||||||| || || |||||||||||| |||| ||  |||||||||| |||||||||||||| |||||  |||| |||| ||||||||    
T  5243161 agatgagacttccttggatcattcatgaatcttctaatgatacttactgcaaagcatatatctggtctactattacataagtatctca 5243074  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 143
Target Start/End: Complemental strand, 5243601 - 5243516
Alignment:
Q  58 tgtcacttgttccatgatgaaatataacctagtttcaacgtgtttacttcttccatgtgctataggattcttagctagattaatag 143  Q
    ||||||||||||| | |||||||  ||||||||||||| |||||| || || ||||||| |||  |||| ||||||| ||| ||||    
T  5243601 tgtcacttgttcccttatgaaatgaaacctagtttcaatgtgttttctcctaccatgtgttattagattgttagctaaatttatag 5243516  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 265 - 332
Target Start/End: Complemental strand, 9636687 - 9636620
Alignment:
Q  265 attcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctca 332  Q
    |||||||||||||||| |||  ||||   |||||||||| ||||||||| ||||||||| ||||||||    
T  9636687 attcatgtatctactggtgaagcttatttcaaagcatatgtcaggtctggtattgcataagtatctca 9636620  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 297
Target Start/End: Original strand, 33717078 - 33717140
Alignment:
Q  236 agctgcaa-aagatgagattttctaggatcattcatgtatctactgctgatacttaccgcaaa 297  Q
    |||||||| ||||| ||||||||  |||||||||||||||||| || |||||||||| |||||    
T  33717078 agctgcaataagattagattttcacggatcattcatgtatctattgatgatacttactgcaaa 33717140  T

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