View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4886_low_8 (Length: 332)
Name: NF4886_low_8
Description: NF4886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4886_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 14 - 322
Target Start/End: Original strand, 36156970 - 36157291
Alignment:
| Q |
14 |
gacatggtccaacatcattaacaaacaatggctcgaaacaacaaattattcgaaaacataatacaaac-------------aacacattatccgaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
36156970 |
gacatggtccaacatcattaacaaacaaaggctcgaaacaacaaattattcgaaaacataatacaaacaacagttcaaaacaacacattatccgaaaaca |
36157069 |
T |
|
| Q |
101 |
taattcttatccaactgatggaaaattcaacacacaaatgaattctagtctgaagagtttgatctctcaagtctgataatcctccgctccatctgcaaat |
200 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36157070 |
tgattcttatccaactgatggaaaattcaacacacaaatgaattctagtctgaagagtttgatctctcaagtctgataatcctccgctccatctgcaaat |
36157169 |
T |
|
| Q |
201 |
tgatcaaagtaatcaaacatattaatatatcatacatgctttggaaactcaagaattgtttccctttcatgcagttagcatctaagatgcattttaaaga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36157170 |
tgatcaaagtaatcaaacatattaatatatcatacatgctttggaaactcaagaattgtttccttttcatgcagttagtatctaagatgcattttaaaga |
36157269 |
T |
|
| Q |
301 |
cctaaaagagttcatgcagcta |
322 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
36157270 |
gctaaaagagttcatgcagcta |
36157291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 107 - 326
Target Start/End: Original strand, 36152152 - 36152370
Alignment:
| Q |
107 |
ttatccaactgatggaaaattcaaca-cacaaatgaattctagtctgaagagtttgatctctcaagtctgataatcctccgctccatctgcaaattgatc |
205 |
Q |
| |
|
|||| |||| |||||||||||||||| |||| || || |||||| ||||||||| ||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
36152152 |
ttattcaaccgatggaaaattcaacagcacagataaactctagtttgaagagttcgatctctcaagtctgataatccttcgttccatctgcaaattgatc |
36152251 |
T |
|
| Q |
206 |
aaagtaatcaaacatattaatatatcatacatgctttggaaactcaagaattgtttccctttcatgcagttagcatctaagatgcattttaaagacctaa |
305 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
36152252 |
aaagtaatcaaacatattaatatatcata--tgctttggaaactcaagaattgtttccccttcatgcagttagtatctaagatgcattttaaagagctaa |
36152349 |
T |
|
| Q |
306 |
aagagttcatgcagctatgcc |
326 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
36152350 |
aagagttcatgcagctatgcc |
36152370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University