View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4886_low_9 (Length: 328)
Name: NF4886_low_9
Description: NF4886
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4886_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 10 - 313
Target Start/End: Complemental strand, 2947559 - 2947256
Alignment:
| Q |
10 |
aagaatataaatcaatgacatttacatttcaggttagttnnnnnnntttcttcatttttaatgtggcacattgtgtgttaatttatcttatttgaaattc |
109 |
Q |
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| T |
2947559 |
aagaatataaatcaatgacatttacatttcaggttagttaaaaaaatttcttcatttttaatgtggcacattgtgtgttaatttatcttatttgaaattc |
2947460 |
T |
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| Q |
110 |
aatgaatgatgatttgcacagctcataactgaaactgcaagacttgcaaatatagttccaggaatcttccggaaggcactaagggaaattaattttaagg |
209 |
Q |
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| T |
2947459 |
aatgaatgatgatttgcacagctcataaccgaaactgcaagacttgcaaatatagttccaggaatcttccggaaggcactaagggaaattaattttaagg |
2947360 |
T |
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| Q |
210 |
gtatgtgattgctaatttaataatacaacattttcaaatttcaatgttcaagtgcattggtaacttgatgtttaagtaatagtggaaaagcacactatat |
309 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2947359 |
gtatgtgattgctaatttaataatacaaaattttcaaatttcaatgttcaagtgcattggtaacttgatgtttaagtaatagtggaaaagcacactatat |
2947260 |
T |
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| Q |
310 |
ttga |
313 |
Q |
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|||| |
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| T |
2947259 |
ttga |
2947256 |
T |
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