View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4887-Insertion-3 (Length: 936)
Name: NF4887-Insertion-3
Description: NF4887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4887-Insertion-3 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-133; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 666 - 936
Target Start/End: Complemental strand, 2443118 - 2442848
Alignment:
| Q |
666 |
agtccatggatcataatttatatttcgttgcannnnnnnatgtctcgaacaaattgattacctcttagatttacatgtacgtgttttattggatctaaag |
765 |
Q |
| |
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|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2443118 |
agtccatggatcataatttatacttcgttgcatttttttatgtctcgaacaaattgattacctctaagatttacatgtacgtgttttattggatctaaag |
2443019 |
T |
|
| Q |
766 |
tttctcacaaatgaattggataattctataaacaatcatgggctacacttgatttgtatatgggaaaaataacccacaaaataattggaataaattatta |
865 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2443018 |
tttctcacaaatgaattggataattctataaacaatcatgggctacacttgatttgtatatgggaaaaataacccacaaaataattggaataaattatta |
2442919 |
T |
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| Q |
866 |
caaaaatatgtgtgaattccttactcaacaatatttgtatatgagtttgttaaccttgtttttgtttcaag |
936 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2442918 |
caaaaatatgtgtgaattccttactcaacaatatttgtatatgagtttgttaaccttgtttttgtttcaag |
2442848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 7 - 421
Target Start/End: Complemental strand, 2446624 - 2446218
Alignment:
| Q |
7 |
aaaaagtcctttaaagtatctctagtctttggataaattttattagaagtttcttctttaaacttcacaattgttaaatcaacatctttatcttttacca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
2446624 |
aaaaagtcctttaaagtatctctagtctttggataaattttattagaagtttcttctttaaacttcacaattgttaaatcaacatctttatcttttgcaa |
2446525 |
T |
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| Q |
107 |
agacatcttcgaagattaaaatgttggaatcaggttctaatactcaaccttttgtaagtgatacgaagt-tttgttgaatacaccacaatat-------a |
198 |
Q |
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| T |
2446524 |
agacatcttcgaggataaaaatgttagaatcaggttctaacacttaaccttttgtaagtgatacaaagtctttgttgaatacaccaaaatatatatataa |
2446425 |
T |
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| Q |
199 |
aaaaatatatattgatcgttatgattgaataccacaaaaattattttaatcaaatacacgacaactttcatggtaaattcgacaattcgacatgtacatg |
298 |
Q |
| |
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||||| | |||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| ||||| |
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| T |
2446424 |
aaaaaaaaatattgattgttatgattgaataccacaagaattattttaatcagatacacgacaattttcatggtaaattcg--------------acatg |
2446339 |
T |
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| Q |
299 |
tacatttgctctttaaattaatagctaaatgagannnnnnnnnaatatttcacaccatttaaaattctactaatatctaaattttatttacccaaaaagc |
398 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2446338 |
tacatttgctctttaaattaatagctaaatgag--ttttttaaaatatttcataccatttaaaattctactaatatctaaattttatttacccaaaaagc |
2446241 |
T |
|
| Q |
399 |
atcataacaatacaatttatata |
421 |
Q |
| |
|
|||||||||||||||| |||||| |
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| T |
2446240 |
atcataacaatacaatatatata |
2446218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 440 - 673
Target Start/End: Complemental strand, 2444278 - 2444045
Alignment:
| Q |
440 |
aatatttttagaggaaattacattaacctcccctgaggtttatgttaatataccctacctcccctctatttgttcacttaacaacaacaccccttgctgt |
539 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2444278 |
aatatttttagagaaaattacattaacctcccctgaggtttatgttaatataccctacctcccctctatttattcacttaacaacaacaccccttgctgt |
2444179 |
T |
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| Q |
540 |
taaactcccatccaccttctgttaaaattacacgctttctctttttaacatcaattcacagctcctacaaaaattaagtaaattaaaagcccaaaaaatc |
639 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2444178 |
taaactccgatccaccttctgttaaaattacacgctttctctttttaacatcaattcacagctcctacaaaaattaagtaaattaaaagcccagaaaatc |
2444079 |
T |
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| Q |
640 |
atagaggcatggaagaggccacaacaagtccatg |
673 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
2444078 |
atagaggcatggaagaggccacaacaagtccatg |
2444045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 9627213 - 9627270
Alignment:
| Q |
40 |
taaattttattagaagtttcttctttaaacttcacaattgttaaatcaacatctttat |
97 |
Q |
| |
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||||||||||| |||||||||||||||||||| |||| |||||||| |||||||| |
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| T |
9627213 |
taaattttattttaagtttcttctttaaacttctcaatcattaaatcattatctttat |
9627270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 6e-49; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 627 - 877
Target Start/End: Original strand, 50983907 - 50984157
Alignment:
| Q |
627 |
agcccaaaaaatcatagaggcatggaagaggccacaacaagtccatggatcataatttatatttcgttgcannnnnnn-atgtctcgaacaaattgatta |
725 |
Q |
| |
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|||||| ||||||||||| | ||||||||||||||||||||||| |||||| |||||| ||||||||||| |||||||||| ||||||||| |
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| T |
50983907 |
agcccagaaaatcatagacacgtggaagaggccacaacaagtccagggatcacaatttacatttcgttgcattttttttatgtctcgaaaaaattgattt |
50984006 |
T |
|
| Q |
726 |
cctcttagatttacatgtacgtgttttattggatctaaagtttctcacaaatgaattggataattctataaacaatcatggg-ctacacttgatttgtat |
824 |
Q |
| |
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|||| | ||||| ||| |||||||||||||||||||||||||| ||| | || ||||||||||||||||||||||||| ||||||||||| ||| | |
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| T |
50984007 |
attcttgggtttaccagtatgtgttttattggatctaaagtttctcgcaattagat-ggataattctataaacaatcatggggctacacttgatctgttt |
50984105 |
T |
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| Q |
825 |
atgggaaaaataacccacaaaataattggaataaattattacaaaaatatgtg |
877 |
Q |
| |
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|||||||||||||||||| ||||||||||| ||||||||| ||||||| |||| |
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| T |
50984106 |
atgggaaaaataacccac-aaataattggagtaaattattgcaaaaatgtgtg |
50984157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 457 - 551
Target Start/End: Original strand, 50983664 - 50983758
Alignment:
| Q |
457 |
ttacattaacctcccctgaggtttatgttaatataccctacctcccctctatttgttcacttaacaacaacaccccttgctgttaaactcccatc |
551 |
Q |
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||||| |||||| |||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
50983664 |
ttacactaacctaccctgaggtttatgttaatatatctcacctcccctctattcgttcacttaacaacaacaccccttgctgttaaactcacatc |
50983758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 442 - 482
Target Start/End: Complemental strand, 25476180 - 25476140
Alignment:
| Q |
442 |
tatttttagaggaaattacattaacctcccctgaggtttat |
482 |
Q |
| |
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||||||||| |||||||||||| |||||||||||||||||| |
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| T |
25476180 |
tatttttaggggaaattacattcacctcccctgaggtttat |
25476140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 452 - 532
Target Start/End: Complemental strand, 52283053 - 52282973
Alignment:
| Q |
452 |
ggaaattacattaacctcccctgaggtttatgttaatataccctacctcccctctatttgttcacttaacaacaacacccc |
532 |
Q |
| |
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|||||||||| ||||||||||||||||||||| |||| | || ||||||| ||||||| ||| || |||||||||||| |
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| T |
52283053 |
ggaaattacacaaacctcccctgaggtttatgtaaatacatccaacctcccgtctattttctcaaatagcaacaacacccc |
52282973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 454 - 571
Target Start/End: Original strand, 34019389 - 34019509
Alignment:
| Q |
454 |
aaattacattaacctcccctgaggtttatgttaatataccctacctcccctctatttgttcactt---aacaacaacaccccttgctgttaaactcccat |
550 |
Q |
| |
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|||||||| ||||| ||||||||||||||||||||||| || | ||||||||||||||||||||| |||||||||| |||||| |||||||||| | | |
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| T |
34019389 |
aaattacactaaccacccctgaggtttatgttaatatatcccatctcccctctatttgttcacttgacaacaacaacaacccttgttgttaaactctcgt |
34019488 |
T |
|
| Q |
551 |
ccaccttctgttaaaattaca |
571 |
Q |
| |
|
||||| |||| |||||||| |
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| T |
34019489 |
ttaccttatgttgaaattaca |
34019509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 452 - 532
Target Start/End: Original strand, 24551277 - 24551357
Alignment:
| Q |
452 |
ggaaattacattaacctcccctgaggtttatgttaatataccctacctcccctctatttgttcacttaacaacaacacccc |
532 |
Q |
| |
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|||||||||| ||||||||||||||||||||| |||||| || ||||||||||| ||| ||| || |||||||||||| |
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| T |
24551277 |
ggaaattacacaaacctcccctgaggtttatgtaaatatatccaacctcccctctgttttctcaaatagcaacaacacccc |
24551357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 454 - 504
Target Start/End: Original strand, 25510290 - 25510340
Alignment:
| Q |
454 |
aaattacattaacctcccctgaggtttatgttaatataccctacctcccct |
504 |
Q |
| |
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||||| || |||||||||||||||||||||| ||||||| | ||||||||| |
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| T |
25510290 |
aaattgcagtaacctcccctgaggtttatgtgaatatactccacctcccct |
25510340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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