View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4887-Insertion-4 (Length: 615)
Name: NF4887-Insertion-4
Description: NF4887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4887-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 8 - 615
Target Start/End: Complemental strand, 54034064 - 54033449
Alignment:
| Q |
8 |
aggagttggcggaggctttgcagttcataatgtgagggagtttttctatgaaattggcatcatattgtcctatccttatgaaggaactctgagcatcccc |
107 |
Q |
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| T |
54034064 |
aggagttggcggaggctttgcagttcataatgtgagggagtttttctatgaaattggcatcatattgtcccatccttatgaaggaactctgagcatcccc |
54033965 |
T |
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| Q |
108 |
ttcaagtaggcgagataaaagacttgagaacatcttcttgttgagccagtcaacaattgttgtgtctcttatcacctaagggtatccacttttgcatccc |
207 |
Q |
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| T |
54033964 |
ttcaagtaggcgagataaaagacttgagaacatcttcttgttgagccagtcaacaattgttgtgtctcttatcacctaagggtgtccacttttgcatccc |
54033865 |
T |
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| Q |
208 |
tataggtctattgttaagaacatctctcaatttcttatcaaagaccagaaattacatgaaaatatggttg----actatctagcagaagcaattcaccga |
303 |
Q |
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| T |
54033864 |
tataggtctattgttaagaacatctctcaatttcttatcaaagaccagaaattacatgaaaatatggttggttgactatctagcagaagcaattcaccga |
54033765 |
T |
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| Q |
304 |
aaaattacatgaaaatgtgaacgcaaaataactaattttacttgcacgagcggaataatgcattgcttggttagaaatttgggtgctaataattgaaatt |
403 |
Q |
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| T |
54033764 |
aaaattacatgaatatgtgaacgcaaaataactaattttacttgcacgagcggaataatgcattgcttggttagaaatttgggtgctaataattgaaatt |
54033665 |
T |
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| Q |
404 |
aactcgtattttttcccaagacaaaatttcgctttcttttcattagatgttttgatgaaagaaactaattaatgctatgttctttaagatgatacttgat |
503 |
Q |
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| T |
54033664 |
aactcgtattttttcccaagacaaaatttcgctttcttttcattagatgttttgatgaaagaaactaattaatgctatgttctttaagatgatacttgat |
54033565 |
T |
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| Q |
504 |
cctcttttcgtttcttcaaattgatcgagagtgatcaggtttcaccaaaactcctttnnnnnnnnngttcacc----caaactatcagtattttagtcat |
599 |
Q |
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| T |
54033564 |
cctcttttcgtttcttcaaattgatcgagagttatcaggtttcaccaaaactcctttaaaaaaaaagttcacccatgcaaactatcagtattttagtcat |
54033465 |
T |
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| Q |
600 |
cagggctccatcttgc |
615 |
Q |
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| T |
54033464 |
cagggctccatcttgc |
54033449 |
T |
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