View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4887-Insertion-5 (Length: 601)
Name: NF4887-Insertion-5
Description: NF4887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4887-Insertion-5 |
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| [»] scaffold0272 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 7 - 599
Target Start/End: Complemental strand, 33713266 - 33712656
Alignment:
| Q |
7 |
aaaaatagcaaatctactatctacgttgtccacatcagtaatatcagaagagccataattgttgaacttttgtgtttctctgagacatgtttgcatataa |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33713266 |
aaaaatagcaaatctactatctacgttgtccacatcagtaatatcagaagagtcataattgttgaacttttgtgtttctctgagacatgtttgcatataa |
33713167 |
T |
|
| Q |
107 |
atgtcaagattggaagcaacattacattatatgagtggtaggacaatggatc-attttgtgtaattggtctcaaaagtgg-----------------ttg |
188 |
Q |
| |
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||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| ||| |
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| T |
33713166 |
atgtcaagattggaaacaacattacattatatcagtggtaggacagtggatttattttgtgtaattggtctcaaaagtggaatgttagaacttcaggttg |
33713067 |
T |
|
| Q |
189 |
gaagagttgcatttaatttcaaaattattgatagaattggaaggtcctggttccatgtttgaatgccataaaaaatagttacaaacagtcccacattgaa |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33713066 |
gaagagttgcatttaatttcaaaattattgatagaattggaaggtcctggtgccatgtttgaatgccataaaaaatagttacaaacagtcccacattgaa |
33712967 |
T |
|
| Q |
289 |
ggtgctgaaacaacaagaggaagatatacctatataaagatccttgtatacactgaaattaattaactcttttagggctgaataagtcacgttgttctgt |
388 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33712966 |
ggtgctgaaacaaccagaggaagatatacctatataaagatccttgtatacactgaaattaattaactcttttagggcttaataagtcacgttgttctgt |
33712867 |
T |
|
| Q |
389 |
ccacttaattctgttgtacattagtaataaattttggtgcaatgaatcttgaataggtccaacattgagagaaattgattttcaattaattttatatttt |
488 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33712866 |
ccacttaattctgttgtacattagtaataaattttggtgcaatgaatcttgaataggtccaacattgagagaaattgattttcaattaattttatatttt |
33712767 |
T |
|
| Q |
489 |
tctattgttgagtcttttcaaaaatcaatgtattgaataaggagtccctaannnnnnnnngtttcttctttggacagaatcatagacaatatgatcatat |
588 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33712766 |
tctattgttgagtcttttcaaaaatcaatgtattgaataaggagtccctaatttttttttgtttcttctttggacagaatcatagacaatatgatcatat |
33712667 |
T |
|
| Q |
589 |
ttaacttcgct |
599 |
Q |
| |
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||||||||||| |
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| T |
33712666 |
ttaacttcgct |
33712656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 10 - 185
Target Start/End: Original strand, 21252111 - 21252284
Alignment:
| Q |
10 |
aatagcaaatctactatctacgttgtccacatcagtaatatcagaagagccataattgttgaacttttgtgtttctctgagacatgtttgcatataaatg |
109 |
Q |
| |
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||||| ||||||||||||| ||||||| |||| ||||||||| |||||||| ||||||| |||||| |||||| |||||||||||||||||| |||| |
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| T |
21252111 |
aatagaaaatctactatcttcgttgtcgacataagtaatatcgtaagagccaaaattgttt--cttttgcgtttctgtgagacatgtttgcatatcaatg |
21252208 |
T |
|
| Q |
110 |
tcaagattggaagcaacattacattatatgagtggtaggacaatggatcattttgtgtaattggtctcaaaagtgg |
185 |
Q |
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|||||| ||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
21252209 |
tcaagagtggaaacaacattacattatatcagtggtaggacagtggatcattttgtgtaattggtctcaacagtgg |
21252284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 7 - 185
Target Start/End: Original strand, 4522 - 4700
Alignment:
| Q |
7 |
aaaaatagcaaatctactatctacgttgtccacatcagtaatatcagaagagccataattgttgaacttttgtgtttctctgagacatgtttgcatataa |
106 |
Q |
| |
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||||| |||||||||||||||| || ||||||||||||||||||||||||||||| |||||| || | |||| ||||||||||||||||||||| ||| | |
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| T |
4522 |
aaaaagagcaaatctactatcttcgctgtccacatcagtaatatcagaagagccaaaattgtcgatcctttgcgtttctctgagacatgtttgcgtatca |
4621 |
T |
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| Q |
107 |
atgtcaagattggaagcaacattacattatatgagtggtaggacaatggatcattttgtgtaattggtctcaaaagtgg |
185 |
Q |
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|||||||| ||||| |||||||||| | ||| | |||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
4622 |
atgtcaagggtggaaacaacattacactttattactggtaggacaatggatcactttgtgtaattggtcttaaaagtgg |
4700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 63980 - 64017
Alignment:
| Q |
195 |
ttgcatttaatttcaaaattatt-gatagaattggaag |
231 |
Q |
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||||||||||||||||||||||| |||||||||||||| |
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| T |
63980 |
ttgcatttaatttcaaaattattcgatagaattggaag |
64017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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