View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4887-Insertion-6 (Length: 342)
Name: NF4887-Insertion-6
Description: NF4887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4887-Insertion-6 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 8 - 342
Target Start/End: Complemental strand, 37084449 - 37084127
Alignment:
| Q |
8 |
ctttgcaaaccttttgatttcacaatatgtttaagttggttgactttcctttttaattacggttgatggttagaattcaattctgttgatgtagaaggat |
107 |
Q |
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| T |
37084449 |
ctttgcaaaccttttgatttcacaatatgtttaagttggttgactttcctttttaattacggttgatggttagaattcaattctgttgatgtagaaggat |
37084350 |
T |
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| Q |
108 |
gttgacnnnnnnnnnnnnnnnnnnnnnatagatagtttgttctgcttggattgctttatatatctgatttattttgattttgttctcgagatcatatttt |
207 |
Q |
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| T |
37084349 |
gttgacttttttttt------------atagatagtttgttctgcttggattgctttatatatctgatttattttgattttgttctcgagatcatatttt |
37084262 |
T |
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| Q |
208 |
ggtttaactagttctggttttgaatttttgttcccaacaacgactccagagtaaaaacgtgcaaaatttaagaaaattagatttacaattatgcttagta |
307 |
Q |
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| T |
37084261 |
ggtttaactagttctggttttgaatttttgttcccaacaacgactccagagtaaaaacgtgcaaaatttaagaaaattagatttacaattatgcttagta |
37084162 |
T |
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| Q |
308 |
tgtagttgatgttgcaatatattcataatataagc |
342 |
Q |
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| T |
37084161 |
tgtagttgatgttgcaatatattcataatataagc |
37084127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 112
Target Start/End: Original strand, 37184866 - 37184948
Alignment:
| Q |
29 |
acaatatgtttaagttggttgactttcctttttaattacggttgatggttagaattcaattctgttgatgtagaaggatgttga |
112 |
Q |
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| T |
37184866 |
acaatatgtt-aagttagtttactttcctttttcataactgttgatagttagaattggattctgctgatgtagagggatgttga |
37184948 |
T |
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