View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4887-Insertion-7 (Length: 299)
Name: NF4887-Insertion-7
Description: NF4887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4887-Insertion-7 |
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Alignment Details
Target: chr6 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 7 - 255
Target Start/End: Original strand, 31943794 - 31944049
Alignment:
| Q |
7 |
attttcagcatgaaatcatgtcaattaaaatataatttccaacatgaagaaataaaccctgaaaacaaaattttcaacatgtgaagaaataaaccct--- |
103 |
Q |
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| T |
31943794 |
attttcagcaagaaatcatgtcaattaaaatataatttccaacatgaagaaataaaccctgaaaacaaaattttcaacatatgaagaaataaaccctaaa |
31943893 |
T |
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| Q |
104 |
nnnnnnnnnnctttcaacat-aaatcaaacaaaataacataaacaccgaattttcaacatgcaatcatagaaataaatcctaaaacagcaaacattcaac |
202 |
Q |
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| T |
31943894 |
aaaaaaaaaactttcaacataaaatcaaacaaaataacataaacaccgaattttcaacatgtaatcatagaaataaatcctaaaacagcaaacattcaac |
31943993 |
T |
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| Q |
203 |
a---nnnnnnnnaaggaccaaactcatgaaatcaagtaaaatataagaaaacacaa |
255 |
Q |
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| T |
31943994 |
attttttttttgaaggactaaactcatgaaatcaagtaaaatataagaaaacacaa |
31944049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 1341983 - 1342061
Alignment:
| Q |
124 |
aaatcaaacaaaataacataa-acaccgaattttcaacatgcaatcatagaaataaatcctaaaacagcaaacattcaaca |
203 |
Q |
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| T |
1341983 |
aaatcaaacaaaataacataatacac--aattttcaacatgcaatcaaagaaataaaccctaaaacaccaaaatttcaaca |
1342061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 1341900 - 1341981
Alignment:
| Q |
7 |
attttcagcatgaaatcatgtcaattaaaa-tataatttccaacatgaagaaataaaccct-gaaaacaaaattttcaacat |
86 |
Q |
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| T |
1341900 |
attttaagcaagaaatcatgtcaaagaaaaatttaatttccaacaagaagaaataaaccctaaaaaacaaaattttgaacat |
1341981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 9394445 - 9394534
Alignment:
| Q |
115 |
tttcaacataaa-tcaaacaaaataacataaacaccgaattttcaacatgcaatcatagaaataaatcctaaaacagcaaacattcaaca |
203 |
Q |
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|||||||||||| ||||||||||||||||||| || | || ||||||| ||||| ||||||||| ||||||||| |||| ||||||| |
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| T |
9394445 |
tttcaacataaaatcaaacaaaataacataaaaacacagttgccaacatgaaatcaaagaaataaaccctaaaacatcaaattttcaaca |
9394534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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