View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4887_high_15 (Length: 237)

Name: NF4887_high_15
Description: NF4887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4887_high_15
NF4887_high_15
[»] chr5 (20 HSPs)
chr5 (1-221)||(9838536-9838756)
chr5 (16-221)||(11050095-11050300)
chr5 (56-200)||(19608128-19608272)
chr5 (56-221)||(10749278-10749443)
chr5 (12-221)||(10598870-10599079)
chr5 (67-219)||(10719172-10719324)
chr5 (78-221)||(10742987-10743130)
chr5 (78-221)||(10562808-10562951)
chr5 (32-221)||(10609491-10609680)
chr5 (12-221)||(10602534-10602743)
chr5 (67-201)||(10765389-10765523)
chr5 (44-150)||(10556772-10556878)
chr5 (10-221)||(10578788-10578999)
chr5 (10-221)||(10590644-10590855)
chr5 (109-220)||(10592729-10592840)
chr5 (99-221)||(10548584-10548706)
chr5 (1-107)||(10593654-10593760)
chr5 (79-198)||(7190806-7190925)
chr5 (76-191)||(10654485-10654600)
chr5 (94-129)||(10664920-10664955)
[»] chr6 (6 HSPs)
chr6 (76-221)||(12897346-12897491)
chr6 (76-221)||(12946422-12946567)
chr6 (76-221)||(12904967-12905112)
chr6 (76-221)||(12930057-12930202)
chr6 (76-221)||(12955859-12956004)
chr6 (163-221)||(12955581-12955639)
[»] chr2 (1 HSPs)
chr2 (76-221)||(17925689-17925834)
[»] chr3 (1 HSPs)
chr3 (13-201)||(31469379-31469561)
[»] chr1 (3 HSPs)
chr1 (100-202)||(39886309-39886411)
chr1 (100-202)||(39893288-39893390)
chr1 (100-202)||(39878205-39878307)


Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 9838536 - 9838756
Alignment:
Q  1 gtttcttatacgagagagattgccaatgtaaggtgacatggacccatgcaacttgtatccttgtaagttcaattttgtaactctttgatgcatggggttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9838536 gtttcttatacgagagagattgccaatgtaaggtgacatggatccatgcaacttgtatccttgtaagttcaattttgtaactctttgatgcatggggttg 9838635  T
Q  101 catgtgattccatgccagttgcagaagtggatagaagaattccaagaatctaagactccatttgggtcactggatattgattctttgaattggagcaatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9838636 catgtgattccatgccagttgcagaagtggatagaagaattccaagaatctaagactccatttgggtcactggatattgattctttgaattggagcaatg 9838735  T
Q  201 caagatgatcagtttggtttc 221  Q
    |||||||||||||||||||||    
T  9838736 caagatgatcagtttggtttc 9838756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 221
Target Start/End: Original strand, 11050095 - 11050300
Alignment:
Q  16 gagattgccaatgtaaggtgacatggacccatgcaacttgtatccttgtaagttcaattttgtaactctttgatgcatggggttgcatgtgattccatgc 115  Q
    |||||||||||  || ||||| || || ||||||||||  ||||||| || |||||| ||||||||||||||||||||| || |||||||||||||||||    
T  11050095 gagattgccaacatagggtgatattgatccatgcaactgatatccttctaggttcaactttgtaactctttgatgcatgaggctgcatgtgattccatgc 11050194  T
Q  116 cagttgcagaagtggatagaagaattccaagaatctaaga-ctccatttgggtcactggatattgattctttgaattggagcaatgcaagatgatcagtt 214  Q
    || |||||||| ||||| |||||||||||||| || |||| ||||||||||||||| | |||||| |||||||||||  | |||||||| |||||| |||    
T  11050195 cacttgcagaaatggatggaagaattccaagattc-aagagctccatttgggtcacggtatattgtttctttgaatttaatcaatgcaaaatgatctgtt 11050293  T
Q  215 tggtttc 221  Q
    |||||||    
T  11050294 tggtttc 11050300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 56 - 200
Target Start/End: Original strand, 19608128 - 19608272
Alignment:
Q  56 tatccttgtaagttcaattttgtaactctttgatgcatggggttgcatgtgattccatgccagttgcagaagtggatagaagaattccaagaatctaaga 155  Q
    |||||||||| |||||||| | |||||||||||||||||||| ||||||||||||||||||| ||||| |||||  | |||  |||||||||||||||||    
T  19608128 tatccttgtaggttcaattctataactctttgatgcatggggctgcatgtgattccatgccaattgcaaaagtgtgttgaactattccaagaatctaaga 19608227  T
Q  156 ctccatttgggtcactggatattgattctttgaattggagcaatg 200  Q
    |||||||||||||| | |||||||| |||||||||||||||||||    
T  19608228 ctccatttgggtcaattgatattgaatctttgaattggagcaatg 19608272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 56 - 221
Target Start/End: Original strand, 10749278 - 10749443
Alignment:
Q  56 tatccttgtaagttcaattttgtaactctttgatgcatggggttgcatgtgattccatgccagttgcagaagtggatagaagaattccaagaatctaaga 155  Q
    ||||||| ||||||||| ||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||    
T  10749278 tatccttctaagttcaactttgtaactctttcatgcatgggtttgcatgtgattccatgccacttgcagaagtggatggaagaattccaagattc-aaga 10749376  T
Q  156 -ctccatttgggtcactggatattgattctttgaattggagcaatgcaagatgatcagtttggtttc 221  Q
     ||  |||||||||||| |||||||||||||| |||| | ||||||| | |||||| ||||||||||    
T  10749377 gctttatttgggtcactcgatattgattctttaaatttgtgcaatgccaaatgatctgtttggtttc 10749443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 10599079 - 10598870
Alignment:
Q  12 gagagagattgccaatgtaaggtgacatggacccatgcaacttgtatccttgtaagttcaattttgtaactctttgatgcatggggttgcatgtgattcc 111  Q
    |||||||||||||||| || || || ||||| |||||||||||||| | | | ||  |||| |||||||||||||||||| |||| |||||| |||||||    
T  10599079 gagagagattgccaatatatggagatatggatccatgcaacttgtaacttggcaacctcaactttgtaactctttgatgcttgggattgcatatgattcc 10598980  T
Q  112 atgccagttgcagaagtggatagaagaattccaagaatctaagactccatttgggtcactggatattgattctttgaattggagcaatgcaagatgatca 211  Q
    |||||| ||||| |||||  | |||  |||||||||||||||||  |||| ||||||||| |||| | |||  |||||||||||||| || | |||||||    
T  10598979 atgccaattgcaaaagtgagttgaactattccaagaatctaagataccatatgggtcactagatactaattggttgaattggagcaaagccaaatgatca 10598880  T
Q  212 gtttggtttc 221  Q
    ||||||||||    
T  10598879 gtttggtttc 10598870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 67 - 219
Target Start/End: Original strand, 10719172 - 10719324
Alignment:
Q  67 gttcaattttgtaactctttgatgcatggggttgcatgtgattccatgccagttgcagaagtggatagaagaattccaagaatctaaga-ctccatttgg 165  Q
    |||||| | ||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||| || |||| || ||| |||    
T  10719172 gttcaactctgtaactctttcatgcatggggctgcatgtgattccatgccacttgcagaagtggatggaagaattccaagattc-aagagcttcatatgg 10719270  T
Q  166 gtcactggatattgattctttgaattggagcaatgcaagatgatcagtttggtt 219  Q
     ||||||| |||| |||||||||||| ||||||||| | |||||| ||||||||    
T  10719271 atcactggttattcattctttgaatttgagcaatgctaaatgatctgtttggtt 10719324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 78 - 221
Target Start/End: Original strand, 10742987 - 10743130
Alignment:
Q  78 taactctttgatgcatggggttgcatgtgattccatgccagttgcagaagtggatagaagaattccaagaatctaaga-ctccatttgggtcactggata 176  Q
    |||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||| || |||| ||  || ||| ||||| ||||    
T  10742987 taactctttgatgcatggggttgcatgtgattccataccacttgcagaagtggatggaagaattccaagactc-aagagctttatatggatcacttgata 10743085  T
Q  177 ttgattctttgaattggagcaatgcaagatgatcagtttggtttc 221  Q
    ||||||||||||||| ||||||||| | |||||| | ||||||||    
T  10743086 ttgattctttgaatttgagcaatgccaaatgatctgattggtttc 10743130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 10562951 - 10562808
Alignment:
Q  78 taactctttgatgcatggggttgcatgtgattccatgccagttgcagaagtggatagaagaattccaagaatctaagactccatt---tgggtcactgga 174  Q
    ||||||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||| || ||||   ||||   ||| ||||||||    
T  10562951 taactctttgatgcatggggttgcaagtgattccctgccacttgcagaagtggatggaagaattccaagattc-aaga--gcattgtatggatcactgga 10562855  T
Q  175 tattgattctttgaattggagcaatgcaagatgatcagtttggtttc 221  Q
    ||||||||||||||||| ||||||||| | |||||| ||||||||||    
T  10562854 tattgattctttgaatttgagcaatgctaaatgatctgtttggtttc 10562808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 32 - 221
Target Start/End: Complemental strand, 10609680 - 10609491
Alignment:
Q  32 ggtgacatggacccatgcaacttgtatccttgtaagttcaattttgtaactctttgatgcatggggttgcatgtgattccatgccagttgcagaagtgga 131  Q
    ||||| ||||| ||||||||||  |||||||  | |||||| | | |||||||||| ||||| | | ||||||||| |||| |||| || || || ||||    
T  10609680 ggtgatatggatccatgcaactgatatccttcaaggttcaactctataactctttgttgcatagagctgcatgtgactccacgccacttacataaatgga 10609581  T
Q  132 tagaagaattccaagaatctaagactccatttgggtcactggatattgattctttgaattggagcaatgcaagatgatcagtttggtttc 221  Q
    | ||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||  |||||||  | || ||||||||||||||    
T  10609580 tggaaaaattccaagaatctaagactccatttggatcattggatattgattctttgaatttaagcaatgacaaataatcagtttggtttc 10609491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 221
Target Start/End: Complemental strand, 10602743 - 10602534
Alignment:
Q  12 gagagagattgccaatgtaaggtgacatggacccatgcaacttgtatccttgtaagttcaattttgtaactctttgatgcatggggttgcatgtgattcc 111  Q
    |||||||||||||||| || || || || || |||||||| ||||| ||||| || ||||| |||||||||||||||||| ||||   |||| |||||||    
T  10602743 gagagagattgccaatatacggagatattgatccatgcaatttgtacccttgcaacttcaagtttgtaactctttgatgcttgggaccgcatatgattcc 10602644  T
Q  112 atgccagttgcagaagtggatagaagaattccaagaatctaagactccatttgggtcactggatattgattctttgaattggagcaatgcaagatgatca 211  Q
    || ||| ||||| |||||| | |||  |||||||||||||| ||  |||| ||| ||||| ||||||  ||  |||||||||||||| || | |||||||    
T  10602643 attccatttgcaaaagtgggttgaactattccaagaatctaggataccatatggatcactagatattagttgcttgaattggagcaaagccaaatgatca 10602544  T
Q  212 gtttggtttc 221  Q
    ||||||||||    
T  10602543 gtttggtttc 10602534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 67 - 201
Target Start/End: Original strand, 10765389 - 10765523
Alignment:
Q  67 gttcaattttgtaactctttgatgcatggggttgcatgtgattccatgccagttgcagaagtggatagaagaattccaagaatctaaga-ctccatttgg 165  Q
    |||||| | |||||| |||||||||||| || ||||||||||||||||||| || || |||||||| |||||||||||||| || |||| ||  || |||    
T  10765389 gttcaactctgtaaccctttgatgcatgaggctgcatgtgattccatgccactttcaaaagtggatggaagaattccaagattc-aagagctttatatgg 10765487  T
Q  166 gtcactggatattgattctttgaattggagcaatgc 201  Q
     ||||| ||||||||||||||||||| |||||||||    
T  10765488 atcacttgatattgattctttgaatttgagcaatgc 10765523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 10556878 - 10556772
Alignment:
Q  44 ccatgcaacttgtatccttgtaagttcaattttgtaactctttgatgcatggggttgcatgtgattccatgccagttgcagaagtggatagaagaattcc 143  Q
    ||||||||||| |||||  |||| ||||| |  ||||||||||||||||||| ||||||||||||||||| ||||||||| || |||||||||  |||||    
T  10556878 ccatgcaacttatatccaggtaacttcaactcagtaactctttgatgcatggtgttgcatgtgattccataccagttgcaaaaatggatagaaccattcc 10556779  T
Q  144 aagaatc 150  Q
    |||||||    
T  10556778 aagaatc 10556772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 10578999 - 10578788
Alignment:
Q  10 acgagagagattgccaatgtaaggtgacatggacccatgcaacttgtatccttgtaagttcaattttgtaactctttgatgcatggggttgcatgtgatt 109  Q
    |||||| ||||||||||  || || || ||||| ||||||||||| |||||| | |  || || || |||| |||||||||| ||||  |||||  ||||    
T  10578999 acgagaaagattgccaacatatggagatatggatccatgcaacttttatcctggcagctttaacttggtaaatctttgatgcttgggactgcatacgatt 10578900  T
Q  110 ccatgccagttgcagaagtggatagaagaattccaagaatctaagactccatttgggtcactggatattgattctttgaattggagcaatgcaagatgat 209  Q
    ||| |||| ||||| |||||| | |||| ||||||||||||||  |  |||| ||| ||||| ||||||||||  |||||||||||||| || | |||||    
T  10578899 ccaggccatttgcaaaagtgggttgaagcattccaagaatctagaataccatatggatcactagatattgattgcttgaattggagcaaagcgaaatgat 10578800  T
Q  210 cagtttggtttc 221  Q
    | ||||||||||    
T  10578799 cggtttggtttc 10578788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 221
Target Start/End: Original strand, 10590644 - 10590855
Alignment:
Q  10 acgagagagattgccaatgtaaggtgacatggacccatgcaacttgtatccttgtaagttcaattttgtaactctttgatgcatggggttgcatgtgatt 109  Q
    |||||| ||||| ||||| || || || ||||| ||||||||||||||||||   |  ||||| || ||||||||||||||| ||||  ||||| |||||    
T  10590644 acgagaaagattaccaatatatggagatatggatccatgcaacttgtatcctgacagcttcaacttggtaactctttgatgcttgggactgcatatgatt 10590743  T
Q  110 ccatgccagttgcagaagtggatagaagaattccaagaatctaagactccatttgggtcactggatattgattctttgaattggagcaatgcaagatgat 209  Q
    |||| ||||||||| |||||  | |||  ||||||   || || ||  |||| ||||||||| |||||| |||  ||||||||||||||||| | |||||    
T  10590744 ccattccagttgcaaaagtgagttgaactattccatttatttaggataccatatgggtcactagatattaattgcttgaattggagcaatgccaaatgat 10590843  T
Q  210 cagtttggtttc 221  Q
    | ||||||||||    
T  10590844 cggtttggtttc 10590855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 109 - 220
Target Start/End: Complemental strand, 10592840 - 10592729
Alignment:
Q  109 tccatgccagttgcagaagtggatagaagaattccaagaatctaagactccatttgggtcactggatattgattctttgaattggagcaatgcaagatga 208  Q
    |||||||||||||||||| ||  |||||| |||||||||||| | || || || |||||| |||||||| || || ||||||| ||||||||| ||||||    
T  10592840 tccatgccagttgcagaattgtgtagaagcattccaagaatcgaggattctatatgggtcgctggatatagactccttgaatttgagcaatgccagatga 10592741  T
Q  209 tcagtttggttt 220  Q
    ||||||||||||    
T  10592740 tcagtttggttt 10592729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 99 - 221
Target Start/End: Complemental strand, 10548706 - 10548584
Alignment:
Q  99 tgcatgtgattccatgccagttgcagaagtggatagaagaattccaagaatctaagactccatttgggtcactggatattgattctttgaattggagcaa 198  Q
    |||| |||||||||||||||||||| || |||||||||  |||||||||||| |  | || || ||||||||||| ||| ||||| |||||||  |||||    
T  10548706 tgcacgtgattccatgccagttgcaaaaatggatagaaccattccaagaatcaagcattctatgtgggtcactggttatagattccttgaatttaagcaa 10548607  T
Q  199 tgcaagatgatcagtttggtttc 221  Q
    ||  |||||||||||||||||||    
T  10548606 tgatagatgatcagtttggtttc 10548584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 10593760 - 10593654
Alignment:
Q  1 gtttcttatacgagagagattgccaatgtaaggtgacatggacccatgcaacttgtatccttgtaagttcaattttgtaactctttgatgcatggggttg 100  Q
    ||||||||||| || |||||||||||| ||||| || ||  | |||||||||||||||||||||||  | ||||||||||||||||||||| |||  |||    
T  10593760 gtttcttatacaagtgagattgccaatataaggagatatatatccatgcaacttgtatccttgtaacattaattttgtaactctttgatgcttggaattg 10593661  T
Q  101 catgtga 107  Q
    |||||||    
T  10593660 catgtga 10593654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 198
Target Start/End: Complemental strand, 7190925 - 7190806
Alignment:
Q  79 aactctttgatgcatggggttgcatgtgattccatgccagttgcagaagtggatagaagaattccaagaatctaagactccatttgggtcactggatatt 178  Q
    ||||||||||||||||||  ||||||||||||||| ||| |||||||||||  | |||  |||||||||  | |||| ||||| ||| ||| | ||||||    
T  7190925 aactctttgatgcatgggactgcatgtgattccataccacttgcagaagtgagttgaactattccaagaggccaagattccatatggatcattagatatt 7190826  T
Q  179 gattctttgaattggagcaa 198  Q
    ||||||||||| | ||||||    
T  7190825 gattctttgaacttgagcaa 7190806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 191
Target Start/End: Original strand, 10654485 - 10654600
Alignment:
Q  76 tgtaactctttgatgcatggggttgcatgtgattccatgccagttgcagaagtggatagaagaattccaagaatctaagactccatttgggtcactggat 175  Q
    ||||||||||||||||||||| || ||||| ||||||||||| || ||| ||||  | |||| |||||||||  | |||| ||||| ||||||| | ||     
T  10654485 tgtaactctttgatgcatgggattacatgtaattccatgccaattacagtagtgatttgaagtattccaagaggccaagattccatatgggtcattagaa 10654584  T
Q  176 attgattctttgaatt 191  Q
    ||||||||||||||||    
T  10654585 attgattctttgaatt 10654600  T

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Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 129
Target Start/End: Original strand, 10664920 - 10664955
Alignment:
Q  94 ggggttgcatgtgattccatgccagttgcagaagtg 129  Q
    |||||||||||||||||||||||| |||||||||||    
T  10664920 ggggttgcatgtgattccatgccaattgcagaagtg 10664955  T

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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 12897491 - 12897346
Alignment:
Q  76 tgtaactctttgatgcatggggttgcatgtgattccatgccagttgcagaagtggatagaagaattccaagaatctaagactccatt---tgggtcactg 172  Q
    |||||||| || |||||||||| ||||||||||||||||||| |||||||| ||||| |||||||||||||| || ||||   ||||   ||||||||||    
T  12897491 tgtaactcgttcatgcatggggctgcatgtgattccatgccacttgcagaaatggatggaagaattccaagattc-aaga--gcattgtatgggtcactg 12897395  T
Q  173 gatattgattctttgaattggagcaatgcaagatgatcagtttggtttc 221  Q
    || |||||||||||||||| ||||||||| | |||||||||||||||||    
T  12897394 gaaattgattctttgaatttgagcaatgccaaatgatcagtttggtttc 12897346  T

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Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 12946567 - 12946422
Alignment:
Q  76 tgtaactctttgatgcatggggttgcatgtgattccatgccagttgcagaagtggatagaagaattccaagaatctaaga-ctccatttgggtcactgga 174  Q
    |||||||| || |||||||||| ||||||||||||||||||| ||||||||||| || || ||||||||||| || |||| ||   | ||||||||||||    
T  12946567 tgtaactcgttcatgcatggggctgcatgtgattccatgccacttgcagaagtgaatggatgaattccaagattc-aagagctttgtatgggtcactgga 12946469  T
Q  175 tattgattctttgaattggagcaatgcaagatgatcagtttggtttc 221  Q
     |||||||||||||||| ||||||||| | |||||||||||||||||    
T  12946468 aattgattctttgaatttgagcaatgccaaatgatcagtttggtttc 12946422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 12905112 - 12904967
Alignment:
Q  76 tgtaactctttgatgcatggggttgcatgtgattccatgccagttgcagaagtggatagaagaattccaagaatctaagactccatt---tgggtcactg 172  Q
    |||||||| || |||||||||| ||||||||||||||||||| |||||||| ||||| |||||||||||||| || ||||   ||||   |||||||||     
T  12905112 tgtaactcgttcatgcatggggctgcatgtgattccatgccacttgcagaaatggatggaagaattccaagattc-aaga--gcattgtatgggtcacta 12905016  T
Q  173 gatattgattctttgaattggagcaatgcaagatgatcagtttggtttc 221  Q
    | ||||||||||||||||| ||||||||| | |||||||||||||||||    
T  12905015 gttattgattctttgaatttgagcaatgccaaatgatcagtttggtttc 12904967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 12930202 - 12930057
Alignment:
Q  76 tgtaactctttgatgcatggggttgcatgtgattccatgccagttgcagaagtggatagaagaattccaagaatctaagactccatt---tgggtcactg 172  Q
    |||||||| || |||||||||| | ||||||||||||||||| |||||||||||||| |||||||||||||| || |||| |  |||   |||||||||     
T  12930202 tgtaactcgttcatgcatggggctacatgtgattccatgccacttgcagaagtggatggaagaattccaagattc-aagagt--attgtatgggtcacta 12930106  T
Q  173 gatattgattctttgaattggagcaatgcaagatgatcagtttggtttc 221  Q
    | ||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  12930105 gttattgattctttgaatttgagcaatgccagatgatcagtttgctttc 12930057  T

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Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 12956004 - 12955859
Alignment:
Q  76 tgtaactctttgatgcatggggttgcatgtgattccatgccagttgcagaagtggatagaagaattccaagaatctaagactccatt---tgggtcactg 172  Q
    |||||||| || |||||||||| ||||||||||||| ||||| |||||||| ||||| |||||||||||||| || ||||   ||||   |||||||||     
T  12956004 tgtaactcgttcatgcatggggctgcatgtgattccttgccacttgcagaaatggatggaagaattccaagattc-aaga--gcattgtatgggtcactt 12955908  T
Q  173 gatattgattctttgaattggagcaatgcaagatgatcagtttggtttc 221  Q
    || |||||||||||||||| ||||||||| | |||||||||||||||||    
T  12955907 gaaattgattctttgaatttgagcaatgccaaatgatcagtttggtttc 12955859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 12955639 - 12955581
Alignment:
Q  163 tgggtcactggatattgattctttgaattggagcaatgcaagatgatcagtttggtttc 221  Q
    ||||||||| || |||||||||||||||| ||||||||| | |||||||||||||||||    
T  12955639 tgggtcactagaaattgattctttgaatttgagcaatgccaaatgatcagtttggtttc 12955581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 17925689 - 17925834
Alignment:
Q  76 tgtaactctttgatgcatggggttgcatgtgattccatgccagttgcagaagtggatagaagaattccaagaatctaaga-ctccatttgggtcactgga 174  Q
    |||||||| || |||||||||| ||||||||||||||||||| |||||||| ||||| |||||||||||||| || |||| ||   | ||||||||| ||    
T  17925689 tgtaactcgttcatgcatggggctgcatgtgattccatgccacttgcagaaatggatggaagaattccaagattc-aagagctttgtatgggtcactaga 17925787  T
Q  175 tattgattctttgaattggagcaatgcaagatgatcagtttggtttc 221  Q
     |||||||||||||||| ||||||||| | |||||||||||||||||    
T  17925788 aattgattctttgaatttgagcaatgccaaatgatcagtttggtttc 17925834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 31469379 - 31469561
Alignment:
Q  13 agagagattgccaatgtaaggtgacatggacccatgcaacttgtatccttgtaagttcaattttgtaactctttgatgcatggggttgcatgtgattcca 112  Q
    ||||||||| ||||  |||||||| || || ||||||||||| ||||||| ||  ||||||| |||||||||||||| ||||      ||||||||||||    
T  31469379 agagagattaccaacataaggtgatatagatccatgcaacttatatccttctagtttcaattctgtaactctttgattcatg------catgtgattcca 31469472  T
Q  113 tgccagttgcagaagtggatagaagaattccaagaatctaagactccatttgggtcactggatattgattctttgaattggagcaatgc 201  Q
    ||||| ||||| || ||  ||||   ||||||||| ||||||| || ||||| |||  ||||||||||||| ||||||| |||||||||    
T  31469473 tgccacttgcaaaattgtgtagagctattccaagagtctaagattctatttgagtctttggatattgattccttgaatttgagcaatgc 31469561  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 202
Target Start/End: Original strand, 39886309 - 39886411
Alignment:
Q  100 gcatgtgattccatgccagttgcagaagtggatagaagaattccaagaatctaagactccatttgggtcactggatattgattctttgaattggagcaat 199  Q
    |||||| | |||||||||  |||| |||||| |||||  ||||||||| | ||| ||||||   ||||||||||| |||||||||||||||| ||| |||    
T  39886309 gcatgttactccatgccacatgcaaaagtgggtagaactattccaagagtttaatactccaaaagggtcactggacattgattctttgaatttgagtaat 39886408  T
Q  200 gca 202  Q
    |||    
T  39886409 gca 39886411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 202
Target Start/End: Original strand, 39893288 - 39893390
Alignment:
Q  100 gcatgtgattccatgccagttgcagaagtggatagaagaattccaagaatctaagactccatttgggtcactggatattgattctttgaattggagcaat 199  Q
    |||||| | |||||||||  |||| |||||| |||||  ||||||||| | ||| ||||||   ||||||||||| |||||||||||||||| ||| |||    
T  39893288 gcatgttactccatgccacatgcaaaagtgggtagaactattccaagagtttaatactccaaaagggtcactggacattgattctttgaatttgagtaat 39893387  T
Q  200 gca 202  Q
    |||    
T  39893388 gca 39893390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 202
Target Start/End: Original strand, 39878205 - 39878307
Alignment:
Q  100 gcatgtgattccatgccagttgcagaagtggatagaagaattccaagaatctaagactccatttgggtcactggatattgattctttgaattggagcaat 199  Q
    |||||| | |||||||||  |||| |||||| |||||  |||||||||   ||| ||||||   |||||||||||||||||||| ||||||| ||| |||    
T  39878205 gcatgttactccatgccacatgcaaaagtgggtagaactattccaagaggttaatactccaaaagggtcactggatattgattccttgaatttgagtaat 39878304  T
Q  200 gca 202  Q
    |||    
T  39878305 gca 39878307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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