View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4887_high_17 (Length: 215)

Name: NF4887_high_17
Description: NF4887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4887_high_17
NF4887_high_17
[»] scaffold0088 (2 HSPs)
scaffold0088 (41-199)||(46914-47073)
scaffold0088 (17-52)||(46855-46890)
[»] chr4 (4 HSPs)
chr4 (102-183)||(11314441-11314522)
chr4 (101-181)||(27918506-27918586)
chr4 (114-182)||(42380866-42380934)
chr4 (117-181)||(42170570-42170634)
[»] chr5 (4 HSPs)
chr5 (102-182)||(40279675-40279755)
chr5 (97-182)||(41954677-41954761)
chr5 (102-187)||(15711128-15711211)
chr5 (97-176)||(14045171-14045250)
[»] chr2 (6 HSPs)
chr2 (102-182)||(11129529-11129609)
chr2 (114-175)||(21425054-21425115)
chr2 (101-182)||(28694479-28694560)
chr2 (102-179)||(43264087-43264162)
chr2 (100-182)||(42063971-42064053)
chr2 (134-182)||(11842010-11842058)
[»] chr3 (5 HSPs)
chr3 (97-182)||(1214866-1214950)
chr3 (141-182)||(43978456-43978497)
chr3 (97-159)||(27039061-27039123)
chr3 (97-150)||(41935957-41936010)
chr3 (97-165)||(25630008-25630076)
[»] chr8 (5 HSPs)
chr8 (97-185)||(33822156-33822244)
chr8 (101-182)||(23052134-23052215)
chr8 (101-179)||(5374500-5374578)
chr8 (97-182)||(33747600-33747687)
chr8 (126-176)||(37288497-37288547)
[»] chr7 (3 HSPs)
chr7 (100-182)||(40343294-40343376)
chr7 (99-181)||(37467224-37467303)
chr7 (116-149)||(22597117-22597150)
[»] chr1 (4 HSPs)
chr1 (108-182)||(9001595-9001669)
chr1 (102-182)||(21937922-21938002)
chr1 (119-179)||(6947947-6948007)
chr1 (97-150)||(4226288-4226341)
[»] chr6 (2 HSPs)
chr6 (144-193)||(8543497-8543546)
chr6 (127-159)||(11213594-11213626)


Alignment Details
Target: scaffold0088 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 41 - 199
Target Start/End: Original strand, 46914 - 47073
Alignment:
Q  41 ataagagacata-ttttatgggcaaagccacaataaaaaacatttaaacacacatacataggaaaataaacatgaatgattctttcatattgtaaagtga 139  Q
    |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46914 ataagagacatacttttacggacaaagccacaataaaaaacatttaaacacacatacataggaaaataaacatgaatgattctttgatattgtaaagtga 47013  T
Q  140 catataatttgaaataaataaattttgctagaatgacatataaagtgggacagatagaat 199  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||    
T  47014 catataatttgaaacaaataaattttgctagaatgacatataaagtggaacagatggaat 47073  T

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Target: scaffold0088; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 46855 - 46890
Alignment:
Q  17 aaaataaatttgttggtttttgatataagagacata 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  46855 aaaataaatttgttggtttttgatataagagacata 46890  T

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Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 11314441 - 11314522
Alignment:
Q  102 aaaataaacatgaatgattctttcatattgtaaagtgacatataatttgaaataaataaattttgctagaatgacatataaa 183  Q
    ||||||||||| ||||||||||| |||||||||| ||| ||||||||||||| |||||||||||| ||||||||||||||||    
T  11314441 aaaataaacattaatgattctttgatattgtaaaatgatatataatttgaaacaaataaattttggtagaatgacatataaa 11314522  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 27918506 - 27918586
Alignment:
Q  101 gaaaataaacatgaatgattctttcatattgtaaagtgacatataatttgaaataaataaattttgctagaatgacatata 181  Q
    |||||||| ||| |||||||| || |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||    
T  27918506 gaaaataagcattaatgattcattgatattgtaaaatgacatataatttgaaagaaacaaattttgctagaatgacatata 27918586  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 114 - 182
Target Start/End: Original strand, 42380866 - 42380934
Alignment:
Q  114 aatgattctttcatattgtaaagtgacatataatttgaaataaataaattttgctagaatgacatataa 182  Q
    ||||||||||| |||||||||||||||||| ||||||||| ||| |||||||| |||||| ||||||||    
T  42380866 aatgattctttgatattgtaaagtgacatagaatttgaaacaaacaaattttgttagaattacatataa 42380934  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 42170634 - 42170570
Alignment:
Q  117 gattctttcatattgtaaagtgacatataatttgaaataaataaattttgctagaatgacatata 181  Q
    |||||||| |||||||||| |||||||||| ||| || ||||| |||||||||||||||||||||    
T  42170634 gattctttgatattgtaaaatgacatataacttggaacaaatagattttgctagaatgacatata 42170570  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 40279675 - 40279755
Alignment:
Q  102 aaaataaacatgaatgattctttcatattgtaaagtgacatataatttgaaataaataaattttgctagaatgacatataa 182  Q
    |||| |||||| |||||||| || |||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||    
T  40279675 aaaaaaaacattaatgattcattaatattgtaaagtgatatataatttgaaataaacaaattttgttagaatgacatataa 40279755  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 97 - 182
Target Start/End: Original strand, 41954677 - 41954761
Alignment:
Q  97 ataggaaaataaacatgaatgattctttcatattgtaaagtgacatataatttgaaataaataaattttgctagaatgacatataa 182  Q
    |||||||||||||| | |||||||| ||  ||||||||||||||||||||||||  | |||| ||||||| |||||||||||||||    
T  41954677 ataggaaaataaacgtcaatgattccttgttattgtaaagtgacatataatttg-gacaaatgaattttggtagaatgacatataa 41954761  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 15711128 - 15711211
Alignment:
Q  102 aaaataaacatgaatgattctttcatattgtaaagtgacatataatttgaaataaataaattttgctagaatgacatataaagtgg 187  Q
    |||||||| || ||| ||||||| |||||||||||||||||||||||||  | ||| |||||||| || |||||| ||||||||||    
T  15711128 aaaataaatattaataattctttgatattgtaaagtgacatataatttg--acaaacaaattttgttaaaatgacttataaagtgg 15711211  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 176
Target Start/End: Original strand, 14045171 - 14045250
Alignment:
Q  97 ataggaaaataaacatgaatgattctttcatattgtaaagtgacatataatttgaaataaataaattttgctagaatgac 176  Q
    |||| ||||||| ||| ||| |||  || |||||||||| ||||||||||||||| | |||||||||||  |||||||||    
T  14045171 atagaaaaataagcattaattatttattgatattgtaaaatgacatataatttgagacaaataaattttattagaatgac 14045250  T

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Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 11129609 - 11129529
Alignment:
Q  102 aaaataaacatgaatgattctttcatattgtaaagtgacatataatttgaaataaataaattttgctagaatgacatataa 182  Q
    ||||||||||| |||||||| || ||||||||||||||||||||||||  || ||| |||||||| |||||||||||||||    
T  11129609 aaaataaacattaatgattccttgatattgtaaagtgacatataatttagaacaaacaaattttgttagaatgacatataa 11129529  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 175
Target Start/End: Complemental strand, 21425115 - 21425054
Alignment:
Q  114 aatgattctttcatattgtaaagtgacatataatttgaaataaataaattttgctagaatga 175  Q
    ||||||||||| | ||||||||||||| ||||||||| || ||| |||||||||||||||||    
T  21425115 aatgattctttgacattgtaaagtgacgtataatttggaacaaacaaattttgctagaatga 21425054  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 182
Target Start/End: Original strand, 28694479 - 28694560
Alignment:
Q  101 gaaaataaacatgaatgattctttcatattgtaaagtgacatataatttgaaataaataaattttgctagaatgacatataa 182  Q
    |||| ||| ||| ||| ||||||| |||||||||| |||||| ||||||| || ||||||||||||||| ||| ||||||||    
T  28694479 gaaattaagcattaataattctttaatattgtaaaatgacatgtaatttggaacaaataaattttgctaaaataacatataa 28694560  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 102 - 179
Target Start/End: Original strand, 43264087 - 43264162
Alignment:
Q  102 aaaataaacatgaatgattctttcatattgtaaagtgacatataatttgaaataaataaattttgctagaatgacata 179  Q
    ||||||| ||| ||||||||||| |||||||||| ||||||||  ||||  | ||| |||||||||||||||||||||    
T  43264087 aaaataagcattaatgattctttgatattgtaaaatgacatat--tttgggaaaaacaaattttgctagaatgacata 43264162  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 42064053 - 42063971
Alignment:
Q  100 ggaaaataaacatgaatgattctttcatattgtaaagtgacatataatttgaaataaataaattttgctagaatgacatataa 182  Q
    |||||||||||||  ||||||| ||  |||| |||| |||| |||||||| | ||||| |||||||| ||||||||| |||||    
T  42064053 ggaaaataaacattgatgattcattggtattataaaatgacttataatttaagataaacaaattttgatagaatgacgtataa 42063971  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 182
Target Start/End: Complemental strand, 11842058 - 11842010
Alignment:
Q  134 aagtgacatataatttgaaataaataaattttgctagaatgacatataa 182  Q
    |||||| ||||||||||||| ||| |||||||| || ||||||||||||    
T  11842058 aagtgaaatataatttgaaacaaagaaattttgttaaaatgacatataa 11842010  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 182
Target Start/End: Original strand, 1214866 - 1214950
Alignment:
Q  97 ataggaaaataaacatgaatgattctttcatattgtaaagtgacatataatttgaaataaataaattttgctagaatgacatataa 182  Q
    |||||||||||||| | |||||||| ||  |||||||||||||||||||||||| || |||| ||||||| |||||||||||||||    
T  1214866 ataggaaaataaacgtcaatgattccttgttattgtaaagtgacatataatttg-aacaaatgaattttggtagaatgacatataa 1214950  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 43978456 - 43978497
Alignment:
Q  141 atataatttgaaataaataaattttgctagaatgacatataa 182  Q
    |||||||||| |||||||||||||||||| ||||||||||||    
T  43978456 atataatttggaataaataaattttgctaaaatgacatataa 43978497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 27039061 - 27039123
Alignment:
Q  97 ataggaaaataaacatgaatgattctttcatattgtaaagtgacatataatttgaaataaata 159  Q
    |||||||||  ||||| |||| ||| ||  ||||||||||||||||| |||||||||||||||    
T  27039061 ataggaaaagtaacattaatgtttcattggtattgtaaagtgacatacaatttgaaataaata 27039123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 41936010 - 41935957
Alignment:
Q  97 ataggaaaataaacatgaatgattctttcatattgtaaagtgacatataatttg 150  Q
    |||||||||| ||||| |||||||| ||  |||||||||| |||||||||||||    
T  41936010 ataggaaaattaacattaatgattcattggtattgtaaagcgacatataatttg 41935957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 25630076 - 25630008
Alignment:
Q  97 ataggaaaataaacatgaatgattctttcatattgtaaagtgacatataatttgaaataaataaatttt 165  Q
    |||| |||||||  || ||||||||||| |||||||||| | ||||||||||| | | |||||||||||    
T  25630076 atagaaaaataagtattaatgattctttgatattgtaaaataacatataatttaagacaaataaatttt 25630008  T

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Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 97 - 185
Target Start/End: Complemental strand, 33822244 - 33822156
Alignment:
Q  97 ataggaaaataaacatgaatgattctttcatattgtaaagtgacatataatttgaaataaataaattttgctagaatgacatataaagt 185  Q
    |||||||||||  ||| |||||||| || ||||||||| ||  | ||||||||| || |||||||||||||||||||||||||||||||    
T  33822244 ataggaaaatacgcattaatgattccttgatattgtaaggtcgcgtataatttggaacaaataaattttgctagaatgacatataaagt 33822156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 101 - 182
Target Start/End: Complemental strand, 23052215 - 23052134
Alignment:
Q  101 gaaaataaacatgaatgattctttcatattgtaaagtgacatataatttgaaataaataaattttgctagaatgacatataa 182  Q
    ||||| |||||| |||||||| || |||||||||||||||||||||||| ||| ||| |||||||||| | |||| ||||||    
T  23052215 gaaaaaaaacattaatgattccttaatattgtaaagtgacatataatttaaaacaaacaaattttgctcggatgatatataa 23052134  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 5374578 - 5374500
Alignment:
Q  101 gaaaataaacatgaatgattctttcatattgtaaagtgacatataatttgaaataaataaattttgctagaatgacata 179  Q
    |||||||||||| ||||||||  | |||||||||| |||||||||||||| || ||| ||||||| ||| |||||||||    
T  5374578 gaaaataaacattaatgattcaatgatattgtaaaatgacatataatttggaacaaacaaattttactaaaatgacata 5374500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 33747687 - 33747600
Alignment:
Q  97 ataggaaaataaacatgaatgattctttcatattgtaaagtgacatata--atttgaaataaataaattttgctagaatgacatataa 182  Q
    ||||||||| ||||||  || |||| |||||| || |||||||||||||  |||||| | ||| ||||||||||||||||| ||||||    
T  33747687 ataggaaaacaaacattgatcattcattcatagtgaaaagtgacatatataatttgagacaaacaaattttgctagaatgatatataa 33747600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 37288497 - 37288547
Alignment:
Q  126 atattgtaaagtgacatataatttgaaataaataaattttgctagaatgac 176  Q
    |||||||||||||||||||||||| ||| ||||||| |||| || ||||||    
T  37288497 atattgtaaagtgacatataatttaaaacaaataaaatttgttaaaatgac 37288547  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 40343376 - 40343294
Alignment:
Q  100 ggaaaataaacatgaatgattctttcatattgtaaagtgacatataatttgaaataaataaattttgctagaatgacatataa 182  Q
    |||||||||| || |||||||| || |||| |||||||||||||||||||  |||||| ||||||| ||| ||||||||||||    
T  40343376 ggaaaataaaaattaatgattccttgatatcgtaaagtgacatataatttagaataaacaaattttactaaaatgacatataa 40343294  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 181
Target Start/End: Original strand, 37467224 - 37467303
Alignment:
Q  99 aggaaaataaacatgaatgattctttcatattgtaaagtgacatataatttgaaataaataaattttgctagaatgacatata 181  Q
    |||||||||||||| ||||||||||  ||||| |||||||||  |||||||| || |||  ||||||| ||||||||||||||    
T  37467224 aggaaaataaacattaatgattcttggatattttaaagtgac--ataatttgcaacaaa-caattttgttagaatgacatata 37467303  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 149
Target Start/End: Complemental strand, 22597150 - 22597117
Alignment:
Q  116 tgattctttcatattgtaaagtgacatataattt 149  Q
    ||||||||| ||||||||||||||||||||||||    
T  22597150 tgattcttttatattgtaaagtgacatataattt 22597117  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 108 - 182
Target Start/End: Complemental strand, 9001669 - 9001595
Alignment:
Q  108 aacatgaatgattctttcatattgtaaagtgacatataatttgaaataaataaattttgctagaatgacatataa 182  Q
    ||||| |||||||| || |||||||||||||||||||||||| ||| ||| |||||||| || ||||||||||||    
T  9001669 aacattaatgattcattgatattgtaaagtgacatataatttaaaacaaacaaattttgttaaaatgacatataa 9001595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 182
Target Start/End: Complemental strand, 21938002 - 21937922
Alignment:
Q  102 aaaataaacatgaatgattctttcatattgtaaagtgacatataatttgaaataaataaattttgctagaatgacatataa 182  Q
    ||||||| ||| |||||||| || ||||| |||| |||||||||||||||   |||||||||||| |||||||||||||||    
T  21938002 aaaataagcatcaatgattcattgatattataaaatgacatataatttgaggcaaataaattttgttagaatgacatataa 21937922  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 6947947 - 6948007
Alignment:
Q  119 ttctttcatattgtaaagtgacatataatttgaaataaataaattttgctagaatgacata 179  Q
    |||||| |||||||||| ||||||||||||||| | ||||| ||||||  |||||||||||    
T  6947947 ttctttgatattgtaaattgacatataatttgatacaaatatattttgtcagaatgacata 6948007  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 4226341 - 4226288
Alignment:
Q  97 ataggaaaataaacatgaatgattctttcatattgtaaagtgacatataatttg 150  Q
    |||||||||  ||||| |||| ||| || |||||||||||||||||||||||||    
T  4226341 ataggaaaagtaacattaatgtttcattgatattgtaaagtgacatataatttg 4226288  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 8543546 - 8543497
Alignment:
Q  144 taatttgaaataaataaattttgctagaatgacatataaagtgggacaga 193  Q
    ||||||| || ||| ||||||||||| ||||||||||||||||| |||||    
T  8543546 taatttggaacaaacaaattttgctaaaatgacatataaagtggaacaga 8543497  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 11213594 - 11213626
Alignment:
Q  127 tattgtaaagtgacatataatttgaaataaata 159  Q
    |||||||||| ||||||||||||||||||||||    
T  11213594 tattgtaaagcgacatataatttgaaataaata 11213626  T

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