View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4887_high_2 (Length: 513)
Name: NF4887_high_2
Description: NF4887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4887_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 9 - 490
Target Start/End: Complemental strand, 49596613 - 49596132
Alignment:
| Q |
9 |
attatactgaaagttaataaacattatatgcatccatcgctgcatattatagcattaaaagtgacaagcatgtgtcttggtatacgataattctgcaatt |
108 |
Q |
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| T |
49596613 |
attatattgaaagttaataaacattatatgcatccatcgctgcatattatagcattaaaagtgacaagcatgtgtcttggtatatgataattctgcaatt |
49596514 |
T |
|
| Q |
109 |
ctccttatttcacaacttgttaacttcaacatccttacctgtctgccttgaattacaatgcagaatgcaatgattagtaatattgtgcatgtttcaaaca |
208 |
Q |
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| T |
49596513 |
ctccttatttcacaacttgttaacttcaacatccttacctgtctgccttgaattacaatgcagaatgcaatgattagtaatattgtgcatgtttcaaaca |
49596414 |
T |
|
| Q |
209 |
ttccgcggagaactgttatcaagtggtttgaagacaaacgtgccgaggagggggttccagaacatcgtcttccttaccagcagtctgctaatgaaacaag |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49596413 |
ttccgcggagaactgttatcaagtggtttgaagacaaacgtgccgaggagggggttccagaacatcgtcttccttaccagcagtctgctaatgaaacaag |
49596314 |
T |
|
| Q |
309 |
ttgaagattttattttcttagttgtttttaatgatgcaagctatatgagaaatcttttcagttgtatgaagaaaaatgtttcaccagcattgatcacgct |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49596313 |
ttgaagattttattttcttagttgtttttaatgatgcaagctatatgagaaatcttttcagttgtatgaaaaaaaatgtttcaccagcattgatcacgct |
49596214 |
T |
|
| Q |
409 |
ttgagggtgagttatataaggaagttgaagtaccgctgatggtgattattaagttgattacaacaccaattatcaaattccc |
490 |
Q |
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| T |
49596213 |
ttgagggtgagttatataaggaagttgaagtaccgctgatggtgattattaagttgattacaacaccaattatcaaattccc |
49596132 |
T |
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