View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4887_high_6 (Length: 370)

Name: NF4887_high_6
Description: NF4887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4887_high_6
NF4887_high_6
[»] chr6 (4 HSPs)
chr6 (1-359)||(13497394-13497758)
chr6 (125-264)||(502909-503047)
chr6 (169-240)||(26514373-26514443)
chr6 (298-352)||(32186196-32186250)
[»] chr7 (5 HSPs)
chr7 (166-251)||(39658805-39658889)
chr7 (178-251)||(4077906-4077978)
chr7 (298-352)||(23887597-23887651)
chr7 (298-352)||(23898773-23898827)
chr7 (304-352)||(8752968-8753016)
[»] chr8 (6 HSPs)
chr8 (166-264)||(37165539-37165636)
chr8 (169-264)||(12341192-12341286)
chr8 (208-251)||(33988502-33988545)
chr8 (298-352)||(37165694-37165748)
chr8 (165-198)||(16048333-16048366)
chr8 (4-40)||(26774497-26774533)
[»] chr4 (6 HSPs)
chr4 (197-264)||(19115061-19115128)
chr4 (165-224)||(13158220-13158278)
chr4 (298-352)||(9690935-9690989)
chr4 (298-352)||(36183050-36183104)
chr4 (165-250)||(43516165-43516249)
chr4 (304-352)||(2072053-2072101)
[»] chr2 (4 HSPs)
chr2 (293-352)||(33583919-33583978)
chr2 (165-223)||(33583844-33583901)
chr2 (169-223)||(44028641-44028694)
chr2 (4-40)||(20004799-20004835)
[»] chr1 (4 HSPs)
chr1 (165-250)||(45795914-45795998)
chr1 (309-352)||(19014567-19014610)
chr1 (178-251)||(7396152-7396224)
chr1 (163-223)||(5809247-5809306)
[»] chr5 (4 HSPs)
chr5 (197-264)||(22094698-22094765)
chr5 (125-199)||(26261694-26261768)
chr5 (298-350)||(34338399-34338451)
chr5 (167-258)||(35637766-35637855)
[»] scaffold0002 (1 HSPs)
scaffold0002 (176-250)||(327563-327636)
[»] chr3 (4 HSPs)
chr3 (177-251)||(15481187-15481260)
chr3 (177-250)||(30166773-30166845)
chr3 (165-250)||(31675570-31675654)
chr3 (165-250)||(34830032-34830116)
[»] scaffold0155 (1 HSPs)
scaffold0155 (214-258)||(32796-32840)


Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 13497394 - 13497758
Alignment:
Q  1 gaaggtcgtttgattctccttaagtttgtcctgacttc-------gtctatattcattctttcttcaaggctttatcagatataatctctacaattaaat 93  Q
    |||||| |||||||||| ||||||||||||||||||||       || ||||||||||||||||||||||||  || ||||||||||| |||||||||||    
T  13497394 gaaggttgtttgattcttcttaagtttgtcctgacttctctacctgtttatattcattctttcttcaaggctccattagatataatctatacaattaaat 13497493  T
Q  94 ctatttgtaatnnnnnnnnnttggggcaggggtgaggatcataggaaagtgtcttgaattaattgaagatttgtttgtttacgaaaggagtatggatggt 193  Q
    |||||||||||         |||||| |||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||     
T  13497494 ctatttgtaataaaaaaaa-ttgggggagggatgaggatcataggaaagtgtcttggattaattggagatttgtttgtttacgaaaggagtatggatggc 13497592  T
Q  194 tggggggttaggcagttgaaggaatttaattatgctttattagggaagtgatgttggacgttgttaatggagagaagtatagggtcgtggttgctaggta 293  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||    
T  13497593 tggggggttaggcaattgaaggaatttaattatgctttattagggaagtgatgttggaggttgttaatggagagaagtatagggttgtgtttgctaggta 13497692  T
Q  294 tggtgttggtggttgggggccggaatctttcttgttggtggagggagatagtgaagattcgtgatg 359  Q
    |||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||    
T  13497693 tggtgttggtggttgggggccggagtgtttcttgttgatggagggagatagtgaagattcgtgatg 13497758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 264
Target Start/End: Original strand, 502909 - 503047
Alignment:
Q  125 gtgaggatcataggaaagtgtcttgaattaattgaagatttgtttgtttacgaaaggagtatggatggttggggggttaggcagttgaaggaatttaatt 224  Q
    ||||||||||||||||| ||||||| ||   ||| || | ||||||| ||| |||||||| |||| |||| |||| |||| ||||||||||| ||||||     
T  502909 gtgaggatcataggaaaatgtcttggataggttggagctctgtttgtctacaaaaggagtttggagggttagggg-ttagacagttgaaggagtttaata 503007  T
Q  225 atgctttattagggaagtgatgttggacgttgttaatgga 264  Q
     ||| ||| ||||||| || ||||||| | ||||| ||||    
T  503008 ttgccttactagggaaatggtgttggaggatgttagtgga 503047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 26514443 - 26514373
Alignment:
Q  169 tgtttacgaaaggagtatggatggttggggggttaggcagttgaaggaatttaattatgctttattagggaa 240  Q
    ||||||||||||||||||||| |||| |||||| || ||| | | ||||||||||  |||||||||||||||    
T  26514443 tgtttacgaaaggagtatggagggtt-gggggtgagacagataagggaatttaatagtgctttattagggaa 26514373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 32186250 - 32186196
Alignment:
Q  298 gttggtggttgggggccggaatctttcttgttggtggagggagatagtgaagatt 352  Q
    ||||| |||||||||||||| |  ||||| ||||||||||||| |||||||||||    
T  32186250 gttggaggttgggggccggagtgcttcttcttggtggagggaggtagtgaagatt 32186196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 166 - 251
Target Start/End: Original strand, 39658805 - 39658889
Alignment:
Q  166 gtttgtttacgaaaggagtatggatggttggggggttaggcagttgaaggaatttaattatgctttattagggaagtgatgttgga 251  Q
    ||||||||||||||||||| |||| | ||||||| | |||||||| | ||||||||||| ||||||||||||||| || |||||||    
T  39658805 gtttgtttacgaaaggagtttggaggattggggg-tgaggcagttaagggaatttaattgtgctttattagggaaatggtgttgga 39658889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 251
Target Start/End: Complemental strand, 4077978 - 4077906
Alignment:
Q  178 aaggagtatggatggttggggggttaggcagttgaaggaatttaattatgctttattagggaagtgatgttgga 251  Q
    ||||||| |||| |||| |||||| || |||||||||||||||||||  ||||| ||||| |||||||||||||    
T  4077978 aaggagtttgga-ggtttgggggtgagacagttgaaggaatttaatttggctttcttaggaaagtgatgttgga 4077906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 23887651 - 23887597
Alignment:
Q  298 gttggtggttgggggccggaatctttcttgttggtggagggagatagtgaagatt 352  Q
    ||||| ||||||||| |||| | |||||| ||||||||||||||||| |||||||    
T  23887651 gttggaggttgggggtcggagtgtttcttcttggtggagggagatagcgaagatt 23887597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 23898827 - 23898773
Alignment:
Q  298 gttggtggttgggggccggaatctttcttgttggtggagggagatagtgaagatt 352  Q
    ||||| ||||||||| |||| | |||||| ||||||||||||||||| |||||||    
T  23898827 gttggaggttgggggtcggagtgtttcttcttggtggagggagatagcgaagatt 23898773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 352
Target Start/End: Original strand, 8752968 - 8753016
Alignment:
Q  304 ggttgggggccggaatctttcttgttggtggagggagatagtgaagatt 352  Q
    |||||||||||||| | | |||||||||||||||||||| | |||||||    
T  8752968 ggttgggggccggagtgtctcttgttggtggagggagattgcgaagatt 8753016  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 264
Target Start/End: Original strand, 37165539 - 37165636
Alignment:
Q  166 gtttgtttacgaaaggagtatggatggttggggggttaggcagttgaaggaatttaattatgctttattagggaagtgatgttggacgttgttaatgga 264  Q
    ||||| |||||||||||| ||||  |||| |||||| |||| ||||||||||||||||  |||| ||||||| ||||||||||||| | ||||| ||||    
T  37165539 gtttgcttacgaaaggagaatggg-ggtttgggggtgaggcggttgaaggaatttaatattgctctattaggaaagtgatgttggaggatgttagtgga 37165636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 264
Target Start/End: Complemental strand, 12341286 - 12341192
Alignment:
Q  169 tgtttacgaaaggagtatggatggttggggggttaggcagttgaaggaatttaattatgctttattagggaagtgatgttggacgttgttaatgga 264  Q
    ||||||||||||||| ||||  |||| |||||| || ||||||||||||||||||   ||||| ||||| ||||| ||||||| | ||||| ||||    
T  12341286 tgtttacgaaaggagaatggg-ggtttgggggtgagacagttgaaggaatttaatatggctttgttaggaaagtggtgttggaggatgttagtgga 12341192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 33988502 - 33988545
Alignment:
Q  208 gttgaaggaatttaattatgctttattagggaagtgatgttgga 251  Q
    ||||||||||||||||| |||||||||||| ||||| |||||||    
T  33988502 gttgaaggaatttaattttgctttattaggtaagtggtgttgga 33988545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 352
Target Start/End: Original strand, 37165694 - 37165748
Alignment:
Q  298 gttggtggttgggggccggaatctttcttgttggtggagggagatagtgaagatt 352  Q
    ||||| |||||||||||||| | |||||  ||||||||||||||||| |||||||    
T  37165694 gttggaggttgggggccggagtgtttctacttggtggagggagatagcgaagatt 37165748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 16048333 - 16048366
Alignment:
Q  165 tgtttgtttacgaaaggagtatggatggttgggg 198  Q
    ||||||||||||||||||||||||| ||||||||    
T  16048333 tgtttgtttacgaaaggagtatggagggttgggg 16048366  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 26774497 - 26774533
Alignment:
Q  4 ggtcgtttgattctccttaagtttgtcctgacttcgt 40  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  26774497 ggtcgtttgattctcattaagtctgtcctgacttcgt 26774533  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 264
Target Start/End: Complemental strand, 19115128 - 19115061
Alignment:
Q  197 ggggttaggcagttgaaggaatttaattatgctttattagggaagtgatgttggacgttgttaatgga 264  Q
    |||||||| ||||||||||| ||||||  ||||||||||||||| || ||||||| ||||||| ||||    
T  19115128 ggggttagacagttgaaggagtttaatattgctttattagggaaatggtgttggaggttgttagtgga 19115061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 13158220 - 13158278
Alignment:
Q  165 tgtttgtttacgaaaggagtatggatggttggggggttaggcagttgaaggaatttaatt 224  Q
    ||||||||||| ||||||||||||| |||| |||| |||  |||||||||||||||||||    
T  13158220 tgtttgtttacaaaaggagtatggagggtt-ggggtttaaacagttgaaggaatttaatt 13158278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 9690989 - 9690935
Alignment:
Q  298 gttggtggttgggggccggaatctttcttgttggtggagggagatagtgaagatt 352  Q
    ||||| |||||||||||||| | |||||  ||||||||||||||||| |||||||    
T  9690989 gttggaggttgggggccggagtgtttctcattggtggagggagatagcgaagatt 9690935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 352
Target Start/End: Complemental strand, 36183104 - 36183050
Alignment:
Q  298 gttggtggttgggggccggaatctttcttgttggtggagggagatagtgaagatt 352  Q
    ||||| |||||||||||||| | |||||  ||||||||||||||||| |||||||    
T  36183104 gttggaggttgggggccggagtgtttctacttggtggagggagatagcgaagatt 36183050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 43516165 - 43516249
Alignment:
Q  165 tgtttgtttacgaaaggagtatggatggttggggggttaggcagttgaaggaatttaattatgctttattagggaagtgatgttgg 250  Q
    |||||| ||||| |||||||||||| |||| |||||| ||| ||||| |||||||||||  |||||| ||||| || || ||||||    
T  43516165 tgtttgcttacgtaaggagtatggagggtt-gggggtgaggaagttgcaggaatttaatagtgctttgttaggtaaatggtgttgg 43516249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 2072101 - 2072053
Alignment:
Q  304 ggttgggggccggaatctttcttgttggtggagggagatagtgaagatt 352  Q
    ||||||||| |||| | ||||||| |||||||||||| |||||||||||    
T  2072101 ggttgggggacggagtgtttcttgctggtggagggagttagtgaagatt 2072053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 352
Target Start/End: Original strand, 33583919 - 33583978
Alignment:
Q  293 atggtgttggtggttgggggccggaatctttcttgttggtggagggagatagtgaagatt 352  Q
    |||||||||| ||||||||| |||| | |||||| ||||||||||||||||| |||||||    
T  33583919 atggtgttggaggttgggggtcggagtgtttcttcttggtggagggagatagcgaagatt 33583978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 33583844 - 33583901
Alignment:
Q  165 tgtttgtttacgaaaggagtatggatggttggggggttaggcagttgaaggaatttaat 223  Q
    ||||||||||| ||||||||||||| |||| |||||| |||||||||| ||| ||||||    
T  33583844 tgtttgtttacaaaaggagtatggagggtt-gggggtaaggcagttgagggagtttaat 33583901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 44028641 - 44028694
Alignment:
Q  169 tgtttacgaaaggagtatggatggttggggggttaggcagttgaaggaatttaat 223  Q
    ||||||||||||||||||||| |||| ||| ||||| ||||||||||| ||||||    
T  44028641 tgtttacgaaaggagtatgga-ggtttgggtgttagacagttgaaggagtttaat 44028694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 20004835 - 20004799
Alignment:
Q  4 ggtcgtttgattctccttaagtttgtcctgacttcgt 40  Q
    |||||||||||| |||||||| |||||||||||||||    
T  20004835 ggtcgtttgattttccttaagattgtcctgacttcgt 20004799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 45795998 - 45795914
Alignment:
Q  165 tgtttgtttacgaaaggagtatggatggttggggggttaggcagttgaaggaatttaattatgctttattagggaagtgatgttgg 250  Q
    |||||||||||| |||||||||||| |||| |||||| ||| ||||| |||||||||||  |||||| ||||| || || ||||||    
T  45795998 tgtttgtttacgtaaggagtatggagggtt-gggggtgaggaagttgcaggaatttaatagtgctttgttaggtaaatggtgttgg 45795914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 352
Target Start/End: Original strand, 19014567 - 19014610
Alignment:
Q  309 ggggccggaatctttcttgttggtggagggagatagtgaagatt 352  Q
    ||||||||| | |||||| |||||||||||||||||||||||||    
T  19014567 ggggccggagtgtttcttcttggtggagggagatagtgaagatt 19014610  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 7396152 - 7396224
Alignment:
Q  178 aaggagtatggatggttggggggttaggcagttgaaggaatttaattatgctttattagggaagtgatgttgga 251  Q
    |||||||||||| ||||| ||| |||| ||||||| ||| |||||||||||||| ||||| | ||| |||||||    
T  7396152 aaggagtatggagggttgaggg-ttagacagttgagggagtttaattatgcttttttaggcatgtggtgttgga 7396224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 223
Target Start/End: Complemental strand, 5809306 - 5809247
Alignment:
Q  163 tttgtttgtttacgaaaggagtatggatggttggggggttaggcagttgaaggaatttaat 223  Q
    |||||||||||||| ||||||||| || |||| |||||| ||| ||||| |||||||||||    
T  5809306 tttgtttgtttacgtaaggagtatagacggtt-gggggtgaggaagttgcaggaatttaat 5809247  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 22094698 - 22094765
Alignment:
Q  197 ggggttaggcagttgaaggaatttaattatgctttattagggaagtgatgttggacgttgttaatgga 264  Q
    |||||||| ||||||||||| ||||||  ||||||| |||||||||| ||||||| | ||||| ||||    
T  22094698 ggggttagacagttgaaggagtttaatattgctttactagggaagtggtgttggaggatgttagtgga 22094765  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 199
Target Start/End: Original strand, 26261694 - 26261768
Alignment:
Q  125 gtgaggatcataggaaagtgtcttgaattaattgaagatttgtttgtttacgaaaggagtatggatggttggggg 199  Q
    ||||||||||||||||| | ||||| |||  ||| | |  |||||||||| |||| |||||||||||||||||||    
T  26261694 gtgaggatcataggaaaatttcttggattggttggaaaactgtttgtttaagaaaagagtatggatggttggggg 26261768  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 350
Target Start/End: Complemental strand, 34338451 - 34338399
Alignment:
Q  298 gttggtggttgggggccggaatctttcttgttggtggagggagatagtgaaga 350  Q
    ||||| |||||||||||||| | |||||| ||||||||||| ||||| |||||    
T  34338451 gttggaggttgggggccggagtgtttcttcttggtggagggggatagcgaaga 34338399  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 258
Target Start/End: Complemental strand, 35637855 - 35637766
Alignment:
Q  167 tttgtttacgaaaggagtatggatggttggggggttaggcagttgaaggaatttaattatgctttattagggaagtgatgttggacgttgtt 258  Q
    ||||||||||||||||| ||||| | ||  ||||| ||||| |||| ||| || |||| ||| |||||||| ||||| ||||||| ||||||    
T  35637855 tttgtttacgaaaggagcatggaggttt--ggggtgaggcaattgagggagttaaattttgcattattaggaaagtggtgttggaggttgtt 35637766  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 327563 - 327636
Alignment:
Q  176 gaaaggagtatggatggttggggggttaggcagttgaaggaatttaattatgctttattagggaagtgatgttgg 250  Q
    |||||||||||||| |||| |||||| || ||||||||||| ||||||  |||||| |||||||| || ||||||    
T  327563 gaaaggagtatgga-ggtttgggggtgagacagttgaaggagtttaatagtgctttgttagggaaatggtgttgg 327636  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 15481187 - 15481260
Alignment:
Q  177 aaaggagtatggatggttggggggttaggcagttgaaggaatttaattatgctttattagggaagtgatgttgga 251  Q
    ||||||| ||||| |||| |||||||||| |||||||||| ||||||  |||||||||||| || || |||||||    
T  15481187 aaaggagcatgga-ggtttgggggttaggaagttgaaggagtttaatattgctttattaggtaaatggtgttgga 15481260  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 30166773 - 30166845
Alignment:
Q  177 aaaggagtatggatggttggggggttaggcagttgaaggaatttaattatgctttattagggaagtgatgttgg 250  Q
    ||||||| ||||| |||| |||||| |||||||||||||||||||||  |||||| ||||| || || ||||||    
T  30166773 aaaggagaatgga-ggtttgggggtgaggcagttgaaggaatttaatagtgctttgttaggtaaatggtgttgg 30166845  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 31675654 - 31675570
Alignment:
Q  165 tgtttgtttacgaaaggagtatggatggttggggggttaggcagttgaaggaatttaattatgctttattagggaagtgatgttgg 250  Q
    ||||||||||||||||||||||||| ||||  ||||| || ||||||| ||| |||||  ||||||| ||||| || || ||||||    
T  31675654 tgtttgtttacgaaaggagtatggagggtt-aggggtgagacagttgagggagtttaaccatgctttgttaggtaaatggtgttgg 31675570  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 34830116 - 34830032
Alignment:
Q  165 tgtttgtttacgaaaggagtatggatggttggggggttaggcagttgaaggaatttaattatgctttattagggaagtgatgttgg 250  Q
    |||||||||||| |||||||||||| |||| |||||| ||| ||||| | |||||||||  |||||| ||||| || || ||||||    
T  34830116 tgtttgtttacgtaaggagtatggagggtt-gggggtgaggaagttgcatgaatttaatagtgctttgttaggtaaatggtgttgg 34830032  T

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Target: scaffold0155 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 32840 - 32796
Alignment:
Q  214 ggaatttaattatgctttattagggaagtgatgttggacgttgtt 258  Q
    |||||||||||  ||||||||||||||||| ||||||| ||||||    
T  32840 ggaatttaatttagctttattagggaagtggtgttggaggttgtt 32796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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