View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4887_high_9 (Length: 350)
Name: NF4887_high_9
Description: NF4887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4887_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 329
Target Start/End: Original strand, 56005228 - 56005541
Alignment:
| Q |
11 |
catcatcaggactattgagtttgatttagtttccatctgttctggtcagtttgattcccactgttcttatataatattgatatgcatttgtttttattga |
110 |
Q |
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| T |
56005228 |
catcatcaggactattgagtttgatttagtttccatctg-----gtcagtttgattcccactgttcttatataatattgatatgcatttgttttcattga |
56005322 |
T |
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| Q |
111 |
tttacttagcctatagggtgaagaagcgtcacatgtgacaaagttcgaaaattgtttaaaacttctgactacaacgtcatcatttttaagaaaattcgag |
210 |
Q |
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| T |
56005323 |
tttacttagcctatagggtgaagaagcgtcacatgtgacaaagttcaaaaattgtttaaaacttctaactacaacgtcatcatttttaagaaaattcgag |
56005422 |
T |
|
| Q |
211 |
gtccttatatctgagagagagagtaatttgatcattgttagtgttgattcaacaaaatcaagagaaaacaaatttgagactagatcagtgtcaaactagt |
310 |
Q |
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| T |
56005423 |
gtccttatatctgagagagagagtaatttgatcattgttagtgttgattcaacaaaatcaagagaaaacaaatttgagactagatcagtgtcaaactagt |
56005522 |
T |
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| Q |
311 |
attgattggatatttaccc |
329 |
Q |
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| T |
56005523 |
attgattggatatttaccc |
56005541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 283
Target Start/End: Complemental strand, 13837212 - 13837180
Alignment:
| Q |
251 |
gtgttgattcaacaaaatcaagagaaaacaaat |
283 |
Q |
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| T |
13837212 |
gtgttgattcaacaaaaccaagagaaaacaaat |
13837180 |
T |
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