View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4887_low_1 (Length: 631)
Name: NF4887_low_1
Description: NF4887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4887_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 20 - 628
Target Start/End: Complemental strand, 56006444 - 56005835
Alignment:
| Q |
20 |
cattgcacttttctttttgtctgtcagtttcttgattcctatattctgcataagaatagagtttggaaagaaagaaaaacttgcattttaggttctacca |
119 |
Q |
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| T |
56006444 |
cattgcacttttctttttgtctgtcagtttcttgattcctatattctgcataagaatagagtttggaaagaaagaaaaacttgcattttaggttctacca |
56006345 |
T |
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| Q |
120 |
atcttcaatgtggttcctacttaaataaaataca-gtataccaaatcagtgtaccttttgcttaagacgatcctctgtaactctaagtctctcgtcgagt |
218 |
Q |
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| T |
56006344 |
atcttcaatgtggttcctacttaaataaaatacaagtataccaaatcagtgtaccttttgcttaagacgatcctctgtaactctaagtctctcgtcgagt |
56006245 |
T |
|
| Q |
219 |
ttactgacttcatttatcagctgaaagtggtggaagacaattatagccatattagactgaataatacggttctaaattgaggttgcggccacaattgcag |
318 |
Q |
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| T |
56006244 |
ttactgacttcatttatcagctgaaagtggtggaagacaattatagccatattagactgaataatacggttctaaattgaggttgcggccacaattgcag |
56006145 |
T |
|
| Q |
319 |
ttgcagaccaaaatttaaaacaaggctgaatactgaaaaattcatatatcttgtaattatgctaaaagtaaataggtagtttcatacttttctattgtaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56006144 |
ttgcagaccaaaatttaaaacaaggctgaatactgaaaaattcatatatcttgtaattatgctaaaagtaaataggtagtttcatacttttctattgtaa |
56006045 |
T |
|
| Q |
419 |
catgacataattaatggtccctaatgcataaagcggcttatgatatacaatgtatgatgaccaattttcttttccaattccaagaaagtccttagaggtg |
518 |
Q |
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| T |
56006044 |
gatgacataattaatggtccctaatgcataaagcggcttatgatatacaatgtatgatgaccaattttcttttccaattccaagaaagtccttagaggtg |
56005945 |
T |
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| Q |
519 |
tttatgtactgatcctatggagagtttgtatagatggatataataaaaatacctcttctatggccttatccttcagagcttcagttgaccttagtgcttt |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56005944 |
tttatgtactgatcctatggagagtttgtatagatggaattaataaaaatacctcttctatggccttatccttcagagcttcagttgaccttagtgcttt |
56005845 |
T |
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| Q |
619 |
catctcactc |
628 |
Q |
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|| |||||| |
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| T |
56005844 |
gatttcactc |
56005835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 9643496 - 9643432
Alignment:
| Q |
180 |
ttaagacgatcctctgtaactctaagtctctcgtcgagtttactgacttcatttatcagctgaaa |
244 |
Q |
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|||||| |||||||| ||| ||| |||||||| || | ||||||||||||||| |||||||||| |
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| T |
9643496 |
ttaagatgatcctctttaagtcttagtctctcatccatcttactgacttcatttctcagctgaaa |
9643432 |
T |
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