View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4887_low_11 (Length: 305)
Name: NF4887_low_11
Description: NF4887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4887_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 78 - 286
Target Start/End: Original strand, 30787878 - 30788086
Alignment:
| Q |
78 |
aatatccaaacaagctaattaactcatcagttaaatatttagatgaatgaatagtttaagggccttttaacagaacttaatagttttgggatcaatttga |
177 |
Q |
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| T |
30787878 |
aatatccaaacaagctaattaactgatcagttaaatatttagatgaatgaatagtttaagggccttttaacataacttaatagttttgggatcaatttga |
30787977 |
T |
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| Q |
178 |
aagaagagtcaaaaactaaattgatattgtattcattttgcatgaaattatttttctcaatgtatattgaaatttagatctcgtggagcaactctaagtt |
277 |
Q |
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| T |
30787978 |
aagaagagtcaaaaactaaattgatattgtattcattttggatgaaattatttttctcaatgtatattgaaatttagatctcgtggagcaactctaagtt |
30788077 |
T |
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| Q |
278 |
tgatactct |
286 |
Q |
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||||||||| |
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| T |
30788078 |
tgatactct |
30788086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 70
Target Start/End: Original strand, 30794 - 30823
Alignment:
| Q |
41 |
cataaaatggttttacaaatatcatttttc |
70 |
Q |
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| T |
30794 |
cataaaatggttttacaaatatcatttttc |
30823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 67
Target Start/End: Original strand, 37873143 - 37873173
Alignment:
| Q |
37 |
ttatcataaaatggttttacaaatatcattt |
67 |
Q |
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| T |
37873143 |
ttatcataaaatggttttacaaatatcattt |
37873173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 49699789 - 49699825
Alignment:
| Q |
36 |
attatcataaaatggttttacaaatatcatttttcat |
72 |
Q |
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| T |
49699789 |
attatcataaaatggttgtacaaatatcatttctcat |
49699825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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