View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4887_low_16 (Length: 220)
Name: NF4887_low_16
Description: NF4887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4887_low_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 36452923 - 36452704
Alignment:
| Q |
1 |
tattggattggtcagattgttgaatggctttatattcatgcatcttccatttggttttccttccagatggagcttttcctatgtaaaacatcatggtttt |
100 |
Q |
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| T |
36452923 |
tattggattggtcagattgttgaatggctttatattcatgcatcttccatttggttttccttccagatggagcttttcctatgtaaaacaccatggtttt |
36452824 |
T |
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| Q |
101 |
ccttattccaatgactttgttgttagaagagtaaacgtagctaggagaacccgtagctttccaatacccacaagatgttgttctgtttggtcttcctcct |
200 |
Q |
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| T |
36452823 |
ccttattccaatgactttgttgttagaagagtaaacgtagctaggagaacccgtagctttccaatacccacaagatgttgttctgtttggtcttcctcct |
36452724 |
T |
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| Q |
201 |
ctcaactctctctcttgtct |
220 |
Q |
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| T |
36452723 |
ctcaactctctatcttgtct |
36452704 |
T |
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Back To:
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Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 3 - 199
Target Start/End: Original strand, 19087174 - 19087370
Alignment:
| Q |
3 |
ttggattggtcagattgttgaatggctttatattcatgcatcttccatttggttttccttccagatggagcttttcctatgtaaaacatcatggttttcc |
102 |
Q |
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|||||||||| ||| |||||||||| | ||||||| |||||||||||| |||||||||||| ||||||||||||| | || || | |||||||||| |
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| T |
19087174 |
ttggattggttagagacttgaatggctctgtattcattcatcttccattttgttttccttccacttggagcttttcctttatagaaaaccatggttttct |
19087273 |
T |
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| Q |
103 |
ttattccaatgactttgttgttagaagagtaaacgtagctaggagaacccgtagctttccaatacccacaagatgttgttctgtttggtcttcctcc |
199 |
Q |
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| T |
19087274 |
tcaccccaataactttgttatctgaagaataaacataaccaggagaacctgttgccttccagtatccacaagcagtagttctattaggtctccctcc |
19087370 |
T |
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