View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4887_low_3 (Length: 421)
Name: NF4887_low_3
Description: NF4887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4887_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Complemental strand, 42100308 - 42099941
Alignment:
| Q |
19 |
taaccccgtatcacaaccgcaacaacctatgatattcaattttgttgtttttctttgggcaattggatgatcatatgtaaatgtcattcataacacttgt |
118 |
Q |
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| T |
42100308 |
taaccccgtatcacagccgcaacaacctatgatattcaattttgttgtttttctttgggcaattggatgatcatatgtaaatgtcattcataacacttgt |
42100209 |
T |
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| Q |
119 |
aatcacatagtaatgcacgcgtttagtagtgcttagactgtaaataagcttgtaaattgtaatcacatatttgtacaatcattcataaggaaatttgacc |
218 |
Q |
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| T |
42100208 |
aatcacatagtaatgcacgcatttagtagtgcttaggctataaataagcttgtaaattgtaatcacatatttgtacaatcattcataaggaaatctgacc |
42100109 |
T |
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| Q |
219 |
acttttcgccgtagatttgggtcaaaattgttgtttcaggatcgtaaatcttgaatattattgtgtgaagttaattagaagcatctacaaagataagtag |
318 |
Q |
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| T |
42100108 |
acttttcgccgtagatttgggtcaaaattgttgtttcaggatcgtaaatcttgaatataattgtgtgaagttaattagaagcatctacgaagataaatag |
42100009 |
T |
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| Q |
319 |
aaccaacacatttgggggaaaatggtgaattgtataaagaaaatgtaggttcgttttagaatattttg |
386 |
Q |
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| T |
42100008 |
aaccaacacatttgggggaaaatggtgaactgtataaagaaaaactaggttcgttttagaatattttg |
42099941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 60 - 123
Target Start/End: Original strand, 41830594 - 41830657
Alignment:
| Q |
60 |
ttgttgtttttctttgggcaattggatgatcatatgtaaatgtcattcataacacttgtaatca |
123 |
Q |
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| T |
41830594 |
ttgttgtttttctttgagcacttggatgatcatatgtatatgacattcataagccttgtaatca |
41830657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 111
Target Start/End: Original strand, 3051906 - 3051936
Alignment:
| Q |
81 |
ttggatgatcatatgtaaatgtcattcataa |
111 |
Q |
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| T |
3051906 |
ttggatgatcatatgtaaatgtcattcataa |
3051936 |
T |
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