View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4887_low_4 (Length: 389)

Name: NF4887_low_4
Description: NF4887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4887_low_4
NF4887_low_4
[»] chr7 (8 HSPs)
chr7 (19-282)||(42592352-42592615)
chr7 (293-342)||(27096343-27096392)
chr7 (293-342)||(27181911-27181960)
chr7 (344-383)||(46816229-46816268)
chr7 (291-339)||(6908214-6908262)
chr7 (291-339)||(13744237-13744285)
chr7 (291-339)||(18864406-18864454)
chr7 (291-339)||(48359321-48359369)
[»] chr1 (9 HSPs)
chr1 (89-253)||(25950789-25950953)
chr1 (291-342)||(41082910-41082962)
chr1 (292-339)||(17518606-17518653)
chr1 (293-342)||(999115-999164)
chr1 (283-339)||(20480160-20480217)
chr1 (291-339)||(13589663-13589711)
chr1 (291-339)||(41083215-41083263)
chr1 (291-339)||(50615625-50615673)
chr1 (291-339)||(50623453-50623501)
[»] chr5 (4 HSPs)
chr5 (293-339)||(31569910-31569956)
chr5 (293-339)||(10098945-10098991)
chr5 (291-342)||(10098520-10098572)
chr5 (291-339)||(43464196-43464244)
[»] chr8 (10 HSPs)
chr8 (291-336)||(9465608-9465653)
chr8 (303-342)||(6092789-6092828)
chr8 (291-336)||(23123339-23123385)
chr8 (313-342)||(3307362-3307391)
chr8 (291-339)||(15156189-15156238)
chr8 (291-339)||(22851391-22851440)
chr8 (294-339)||(43162543-43162588)
chr8 (291-339)||(13936724-13936772)
chr8 (291-339)||(34313766-34313813)
chr8 (291-339)||(43162235-43162283)
[»] chr6 (2 HSPs)
chr6 (293-342)||(31598729-31598778)
chr6 (291-339)||(10039677-10039725)
[»] chr4 (7 HSPs)
chr4 (290-339)||(22681575-22681624)
chr4 (291-339)||(24775787-24775836)
chr4 (291-342)||(11241390-11241442)
chr4 (291-339)||(11241665-11241713)
chr4 (293-341)||(12757770-12757818)
chr4 (291-339)||(54508816-54508865)
chr4 (291-339)||(3930484-3930532)
[»] scaffold0110 (2 HSPs)
scaffold0110 (291-339)||(45538-45586)
scaffold0110 (291-339)||(45811-45859)
[»] scaffold0002 (1 HSPs)
scaffold0002 (291-339)||(411924-411972)
[»] chr2 (4 HSPs)
chr2 (291-339)||(6171157-6171205)
chr2 (290-339)||(18296076-18296126)
chr2 (291-339)||(6495725-6495774)
chr2 (291-339)||(29230283-29230332)
[»] scaffold0001 (1 HSPs)
scaffold0001 (293-339)||(183367-183413)
[»] scaffold0319 (1 HSPs)
scaffold0319 (291-339)||(6701-6749)
[»] chr3 (4 HSPs)
chr3 (291-339)||(3353129-3353177)
chr3 (291-339)||(8315086-8315134)
chr3 (291-339)||(42673300-42673348)
chr3 (291-339)||(47871126-47871174)


Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 42592615 - 42592352
Alignment:
Q  19 aataatgctaaggattgatttactgaaataaattaagtaaagttacttcaatttatatcagctcagctgatttcatactccatgctttgagattctccac 118  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42592615 aataatgctaaggattgatttactaaaataaattaagtaaagttacttcaatttatatcagctcagctgatttcatactccatgctttgagattctccac 42592516  T
Q  119 aatgatcggttcagtgccattgttaaacacaaacaaatgagcttgatttgccacggctagtactggataaaccctagacaaaatgttcgttttacctcct 218  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  42592515 aatgatcggttcagtgccattgttaaacacaaacaaattagcttgatttgccacggctagtactggataaaccctagacaaaatgtttgttttacctcct 42592416  T
Q  219 tctccaaaactttccaccactgaatgatcaatctggaaattaaaaaatcaatcattaatcaatt 282  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  42592415 tctccaaaactttccaccactgaatgatcaatctgaaaattagaaaatcaatcattaatcaatt 42592352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 27096392 - 27096343
Alignment:
Q  293 ttaattgtacttttcctccaatcttttgtcaattgtgcgattttgcatcc 342  Q
    ||||||| |||||||| || ||||||||||||||||| ||||||||||||    
T  27096392 ttaattgcacttttccccctatcttttgtcaattgtgtgattttgcatcc 27096343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 342
Target Start/End: Original strand, 27181911 - 27181960
Alignment:
Q  293 ttaattgtacttttcctccaatcttttgtcaattgtgcgattttgcatcc 342  Q
    ||||||| |||||||| || ||||||||||||||||| ||||||||||||    
T  27181911 ttaattgcacttttccccctatcttttgtcaattgtgtgattttgcatcc 27181960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 383
Target Start/End: Complemental strand, 46816268 - 46816229
Alignment:
Q  344 tttctagtttgaaggcccccatatattttgatgatgatgt 383  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  46816268 tttctggtttgaaggcccccatatattttaatgatgatgt 46816229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 6908214 - 6908262
Alignment:
Q  291 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||||| || |||| |||| |||||||||||||||||    
T  6908214 gcttaattgcacttttccccctatctattgttaattgtgcgattttgca 6908262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 13744285 - 13744237
Alignment:
Q  291 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||||| || ||  |||||||||||||||||||||||    
T  13744285 gcttaattgcacttttccccctatagtttgtcaattgtgcgattttgca 13744237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 18864454 - 18864406
Alignment:
Q  291 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    |||||||||||||||||| || ||  |||| ||||||||||||||||||    
T  18864454 gcttaattgtacttttccccctatagtttgccaattgtgcgattttgca 18864406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 48359321 - 48359369
Alignment:
Q  291 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||||| || ||  |||||||||||||||||||||||    
T  48359321 gcttaattgcacttttccccctatagtttgtcaattgtgcgattttgca 48359369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 89 - 253
Target Start/End: Original strand, 25950789 - 25950953
Alignment:
Q  89 tttcatactccatgctttgagattctccacaatgatcggttcagtgccattgttaaacacaaacaaatgagcttgatttgccacggctagtactggataa 188  Q
    |||||| |||||||| || || ||||||||| | ||| | |||||||| || || |||||||||||||||||||  |    ||| ||||    |||||||    
T  25950789 tttcatgctccatgcctttagtttctccacagttatctgctcagtgccgttattgaacacaaacaaatgagctttttcattcactgctaccgttggataa 25950888  T
Q  189 accctagacaaaatgttcgttttacctccttctccaaaactttccaccactgaatgatcaatctg 253  Q
    ||||||||||| || || ||||| |||||  |||||||||| |||||||| || |||||||||||    
T  25950889 accctagacaagatatttgttttccctccagctccaaaactctccaccacagagtgatcaatctg 25950953  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 41082910 - 41082962
Alignment:
Q  291 gcttaattgtactttt-cctccaatcttttgtcaattgtgcgattttgcatcc 342  Q
    |||||||||||||||| || || |||||||| |||||||||||||||||||||    
T  41082910 gcttaattgtactttttccccctatcttttgccaattgtgcgattttgcatcc 41082962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 292 - 339
Target Start/End: Complemental strand, 17518653 - 17518606
Alignment:
Q  292 cttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    |||||||| |||||||| || |||||||| ||||||||||||||||||    
T  17518653 cttaattgcacttttccccctatcttttgccaattgtgcgattttgca 17518606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 342
Target Start/End: Original strand, 999115 - 999164
Alignment:
Q  293 ttaattgtacttttcctccaatcttttgtcaattgtgcgattttgcatcc 342  Q
    ||||||| |||||||| || ||  ||||||||||||||||||||||||||    
T  999115 ttaattgcacttttccccctatagtttgtcaattgtgcgattttgcatcc 999164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 20480160 - 20480217
Alignment:
Q  283 aagaataag-cttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||||| |||||||| || ||  |||||||||||||||||||||||    
T  20480160 aagaataaggcttaattgcacttttccccctatagtttgtcaattgtgcgattttgca 20480217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 13589711 - 13589663
Alignment:
Q  291 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||||| || ||||||||  |||||||||||||||||    
T  13589711 gcttaattgcacttttccccctatcttttgctaattgtgcgattttgca 13589663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 41083263 - 41083215
Alignment:
Q  291 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||||| || ||||||||| | |||||||||||||||    
T  41083263 gcttaattgcacttttccccctatcttttgttagttgtgcgattttgca 41083215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 50615673 - 50615625
Alignment:
Q  291 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||||| || ||  |||||||||||||||||||||||    
T  50615673 gcttaattgcacttttccccctatagtttgtcaattgtgcgattttgca 50615625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 50623501 - 50623453
Alignment:
Q  291 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||||| || ||  |||||||||||||||||||||||    
T  50623501 gcttaattgcacttttccccctatagtttgtcaattgtgcgattttgca 50623453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 31569910 - 31569956
Alignment:
Q  293 ttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||| |||||||| || |||||||||||||||||||||||||||    
T  31569910 ttaattgcacttttccccctatcttttgtcaattgtgcgattttgca 31569956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Complemental strand, 10098991 - 10098945
Alignment:
Q  293 ttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||| ||||||||||| ||  |||||||||||||||||||||||    
T  10098991 ttaattgcacttttcctcctatagtttgtcaattgtgcgattttgca 10098945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 10098520 - 10098572
Alignment:
Q  291 gcttaattgtactttt-cctccaatcttttgtcaattgtgcgattttgcatcc 342  Q
    ||||||||| |||||| ||||| ||  ||||||||||||||||||||||||||    
T  10098520 gcttaattgcactttttcctcctatagtttgtcaattgtgcgattttgcatcc 10098572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 43464244 - 43464196
Alignment:
Q  291 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||||| || ||  |||||||||||||||||||||||    
T  43464244 gcttaattgcacttttccccctatagtttgtcaattgtgcgattttgca 43464196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 9465608 - 9465653
Alignment:
Q  291 gcttaattgtacttttcctccaatcttttgtcaattgtgcgatttt 336  Q
    ||||||||| ||||||||||| |||||||||||||||||| |||||    
T  9465608 gcttaattgcacttttcctcctatcttttgtcaattgtgcaatttt 9465653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 303 - 342
Target Start/End: Original strand, 6092789 - 6092828
Alignment:
Q  303 ttttcctccaatcttttgtcaattgtgcgattttgcatcc 342  Q
    |||||| || ||||||||||||||||||||||||||||||    
T  6092789 ttttccccctatcttttgtcaattgtgcgattttgcatcc 6092828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 23123339 - 23123385
Alignment:
Q  291 gcttaattgtacttttcc-tccaatcttttgtcaattgtgcgatttt 336  Q
    ||||||||| |||||||| ||| ||||||||||||||||||||||||    
T  23123339 gcttaattgcacttttccctcctatcttttgtcaattgtgcgatttt 23123385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 342
Target Start/End: Original strand, 3307362 - 3307391
Alignment:
Q  313 atcttttgtcaattgtgcgattttgcatcc 342  Q
    ||||||||||||||||||||||||||||||    
T  3307362 atcttttgtcaattgtgcgattttgcatcc 3307391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 15156238 - 15156189
Alignment:
Q  291 gcttaattgtacttttcctcca-atcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||||| ||  |||||||||||||||||||||||||||    
T  15156238 gcttaattgcacttttcccccctatcttttgtcaattgtgcgattttgca 15156189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 22851391 - 22851440
Alignment:
Q  291 gcttaattgtacttttc-ctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| ||||||| | || |||||||||||||||||||||||||||    
T  22851391 gcttaattgcacttttcacccctatcttttgtcaattgtgcgattttgca 22851440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 43162588 - 43162543
Alignment:
Q  294 taattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    |||||| |||||||| || ||||||||||||| |||||||||||||    
T  43162588 taattgcacttttccccctatcttttgtcaatcgtgcgattttgca 43162543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 13936724 - 13936772
Alignment:
Q  291 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||||| || |||||||  ||||||||||||||||||    
T  13936724 gcttaattgcacttttccccctatcttttaccaattgtgcgattttgca 13936772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 34313766 - 34313813
Alignment:
Q  291 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||||| || ||||||||| |||||||||||||||||    
T  34313766 gcttaattgcacttttcc-cctatcttttgttaattgtgcgattttgca 34313813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 43162235 - 43162283
Alignment:
Q  291 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||||| || || |||||| |||||||||||||||||    
T  43162235 gcttaattgcacttttccccctatattttgttaattgtgcgattttgca 43162283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 31598778 - 31598729
Alignment:
Q  293 ttaattgtacttttcctccaatcttttgtcaattgtgcgattttgcatcc 342  Q
    ||||||| |||||||| || ||||||||| ||||||||||||||||||||    
T  31598778 ttaattgcacttttccccctatcttttgttaattgtgcgattttgcatcc 31598729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 10039677 - 10039725
Alignment:
Q  291 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||||| || ||||||||  |||||||||||||||||    
T  10039677 gcttaattgcacttttccccctatcttttgctaattgtgcgattttgca 10039725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 22681575 - 22681624
Alignment:
Q  290 agcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    |||||||||| ||||| || || |||||||||||||||||||||||||||    
T  22681575 agcttaattgcactttcccccctatcttttgtcaattgtgcgattttgca 22681624  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 24775836 - 24775787
Alignment:
Q  291 gcttaattgtacttttcc-tccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||||| ||| |||||||||||||||||||||||||||    
T  24775836 gcttaattgcacttttccctcctatcttttgtcaattgtgcgattttgca 24775787  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 11241390 - 11241442
Alignment:
Q  291 gcttaattgtacttttcctcca-atcttttgtcaattgtgcgattttgcatcc 342  Q
    ||||||||| |||||||||||  ||||||||| ||||||||||||||||||||    
T  11241390 gcttaattgcacttttcctccttatcttttgttaattgtgcgattttgcatcc 11241442  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 11241713 - 11241665
Alignment:
Q  291 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    |||||||||||||||||| || |||||||| |||||||| |||||||||    
T  11241713 gcttaattgtacttttccccctatcttttgccaattgtgggattttgca 11241665  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 341
Target Start/End: Original strand, 12757770 - 12757818
Alignment:
Q  293 ttaattgtacttttcctccaatcttttgtcaattgtgcgattttgcatc 341  Q
    ||||||||||||||||| | ||  |||||||||||||||||||||||||    
T  12757770 ttaattgtacttttccttctatagtttgtcaattgtgcgattttgcatc 12757818  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 54508816 - 54508865
Alignment:
Q  291 gcttaattgtactttt-cctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||| |||||||||||||| |||||||| |||||||||    
T  54508816 gcttaattgcactttttcctccaatcttttgccaattgtgtgattttgca 54508865  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 3930532 - 3930484
Alignment:
Q  291 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||||| || ||||||||  |||||||||||||||||    
T  3930532 gcttaattgcacttttccccctatcttttgctaattgtgcgattttgca 3930484  T

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Target: scaffold0110 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 45538 - 45586
Alignment:
Q  291 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||||| || ||||||||| |||||||||||||||||    
T  45538 gcttaattgcacttttccccctatcttttgttaattgtgcgattttgca 45586  T

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Target: scaffold0110; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 45859 - 45811
Alignment:
Q  291 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||||| || |||||||| ||||||||||||||||||    
T  45859 gcttaattgcacttttccccctatcttttgccaattgtgcgattttgca 45811  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 411924 - 411972
Alignment:
Q  291 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| ||||| || || |||||||||||||||||||||||||||    
T  411924 gcttaattgcactttaccccctatcttttgtcaattgtgcgattttgca 411972  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 6171157 - 6171205
Alignment:
Q  291 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||||| || ||||||||| |||||||||||||||||    
T  6171157 gcttaattgcacttttccccctatcttttgttaattgtgcgattttgca 6171205  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 339
Target Start/End: Original strand, 18296076 - 18296126
Alignment:
Q  290 agcttaattgtacttttc-ctccaatcttttgtcaattgtgcgattttgca 339  Q
    |||||||||||||||||| | || |||||||| ||||||||||||||||||    
T  18296076 agcttaattgtacttttcacccctatcttttgccaattgtgcgattttgca 18296126  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 6495774 - 6495725
Alignment:
Q  291 gcttaattgtacttttcctcca-atcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||||||||  ||||||||| |||||||||||||||||    
T  6495774 gcttaattgcacttttcctccctatcttttgtgaattgtgcgattttgca 6495725  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 29230283 - 29230332
Alignment:
Q  291 gcttaattgtacttttcctc-caatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||||||| | ||||||||||||||||| |||||||||    
T  29230283 gcttaattgcacttttcctctctatcttttgtcaattgtgtgattttgca 29230332  T

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Target: scaffold0001 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 339
Target Start/End: Original strand, 183367 - 183413
Alignment:
Q  293 ttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||| |||||||| || |||||||||||||||| ||||||||||    
T  183367 ttaattgcacttttccccctatcttttgtcaattgtacgattttgca 183413  T

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Target: scaffold0319 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 6749 - 6701
Alignment:
Q  291 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||||| || ||||||||  |||||||||||||||||    
T  6749 gcttaattgcacttttccccctatcttttgctaattgtgcgattttgca 6701  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 3353129 - 3353177
Alignment:
Q  291 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||||| || ||  |||||||||||||||||||||||    
T  3353129 gcttaattgcacttttccccctatagtttgtcaattgtgcgattttgca 3353177  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 8315134 - 8315086
Alignment:
Q  291 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| ||||| || || || ||||||||||||||||||||||||    
T  8315134 gcttaattgcactttcccccctatattttgtcaattgtgcgattttgca 8315086  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 42673348 - 42673300
Alignment:
Q  291 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||||| || ||  |||||||||||||||||||||||    
T  42673348 gcttaattgcacttttccccctatagtttgtcaattgtgcgattttgca 42673300  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 339
Target Start/End: Complemental strand, 47871174 - 47871126
Alignment:
Q  291 gcttaattgtacttttcctccaatcttttgtcaattgtgcgattttgca 339  Q
    ||||||||| |||||||| || ||||||||  |||||||||||||||||    
T  47871174 gcttaattgcacttttccccctatcttttgctaattgtgcgattttgca 47871126  T

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