View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4887_low_5 (Length: 379)
Name: NF4887_low_5
Description: NF4887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4887_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 368
Target Start/End: Complemental strand, 1057866 - 1057514
Alignment:
| Q |
17 |
agatctttctagttagtaatcaccatgcattatatgttgaagaatttatatttaagtacaaagtcatggaagaaaacaaggtcaagtgtgtttgtgaagt |
116 |
Q |
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| T |
1057866 |
agatctttctagttagtaatcaccatgcattatatgttgaagaatttatatttaagtacaaagtcatggaagaaaacaaggtcaagtgtgtttgtgaagt |
1057767 |
T |
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| Q |
117 |
tttcaccaaatgtgggtctttaccttcaagttgagtcgtacagctgtaatttccaagaaagacacctagcgaattgagttgtttattttattcttgagat |
216 |
Q |
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| T |
1057766 |
tttcaccaaatgtgggtctttaccttcaagttgagtcgtacagctgtaatttccaagaaagacacctagcgaattgagttgtttattttattcttgagat |
1057667 |
T |
|
| Q |
217 |
agtaaagattttgtcaagtttttcatttttaaccatagttcttgcccatataaaccaacatgctttagtcacnnnnnnnnnnnnnnntccaacatgctgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
1057666 |
agtaaagattttgtcaagtttttcatttttaaccatagttcttgcccatataaaccaacatgctttagtcacaaaaaataaaaaaaattcaacatgctgt |
1057567 |
T |
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| Q |
317 |
gaac-attaatgacatataaccggccggtaaaagctcatgtttaggggttcat |
368 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
1057566 |
gaacaattaatgacatataaccggccggtaaaagctcatggttagggcttcat |
1057514 |
T |
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