View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4887_low_7 (Length: 357)
Name: NF4887_low_7
Description: NF4887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4887_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 339
Target Start/End: Complemental strand, 13497364 - 13497044
Alignment:
| Q |
17 |
acaatttagaattaatgcttaggaaatcataaattattaagccaattctttcattagtnnnnnnnnngccaattttcgcatgtaacaaaaacaaattatt |
116 |
Q |
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| T |
13497364 |
acaatttagaattaatgcttaggaaatcataaattattaagccaattctctcattattcaaaaaatggc-aattatctcatgtaacaaaaaaaaaattat |
13497266 |
T |
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| Q |
117 |
taggccaacaattttttgatatacgttgtgattattttatttgcatacatcaaaaattaatctatgnnnnnnngatgaattatagctaaagaagaaatta |
216 |
Q |
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| T |
13497265 |
taggccaacaattttttgatatacgttgtgattattttatttgcatacatcagaaattaatctatgaaaaaa-gatgaattatagctaaagaagaaatta |
13497167 |
T |
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| Q |
217 |
cacttagnnnnnnntatttcattgtttcgaacatggattacatcatcgacacatatatttttgatatactatgtgactactttattatgccaacaatttt |
316 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13497166 |
cacttaaaaaaaaatatttcattgtttcgaacatggattacatcatcgacacatatatttttgatatactatgtgactactttattatgccaacaatttt |
13497067 |
T |
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| Q |
317 |
cactaattaatttcataagcatc |
339 |
Q |
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| T |
13497066 |
cagtaattaatttcataagcatc |
13497044 |
T |
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