View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4887_low_8 (Length: 351)
Name: NF4887_low_8
Description: NF4887
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4887_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 35189499 - 35189165
Alignment:
| Q |
1 |
agacactcttgatgatgaggttagaaggatcaatttcccactcttctctttgctccatgttattaccaccagtagtagcaatagagtttgagtgatcatg |
100 |
Q |
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| T |
35189499 |
agacactcttgatgatgaggttagaaggatcaatttcccactcttctctttgctccatgttattaccaccagtagtagcaatagagtttgagtgatcatg |
35189400 |
T |
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| Q |
101 |
agaagaatcatcatttaccttgttgaagtgtttctcaagttgttcatcaatggtttttagatcaatttgatcagctctcacaaacccatcattcattttt |
200 |
Q |
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| T |
35189399 |
agaagaatcatcatttaccttgttgaagtgtttctcaagttgttcatcaatggtttttagatcaatttgatcagctctcacaaacccatcattcattttt |
35189300 |
T |
|
| Q |
201 |
ccacaccctatcttctgaggatgtgattgattattggtgcagcataaatagaatagaatagaatagaggggacattgattgtggtaaaatgtagtattat |
300 |
Q |
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| T |
35189299 |
ccacaccctatcttctgagaatgtgattgattattggtgcagcataaatagaatagaa-----tagaggggacattgattgtggtaaaatgtagtattat |
35189205 |
T |
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| Q |
301 |
ggtggatagagagagtgtttgagttgtcgtttgatgatgt |
340 |
Q |
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| T |
35189204 |
ggtggatagagagagtgtttgagttgtcgtttgatgatgt |
35189165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 43970669 - 43970595
Alignment:
| Q |
117 |
accttgttgaagtgtttctcaagttgttcatcaatggtttttagatcaatttgatcagctctcacaaacccatca |
191 |
Q |
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| T |
43970669 |
accttgttgagatgtctttcaagctgttcatcgatgcttttcagatcaatctgatctgctcttacaaacccatca |
43970595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 43970861 - 43970824
Alignment:
| Q |
3 |
acactcttgatgatgaggttagaaggatcaatttccca |
40 |
Q |
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||||| ||||||||||| |||||||||||||||||||| |
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| T |
43970861 |
acacttttgatgatgagtttagaaggatcaatttccca |
43970824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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