View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4888-Insertion-2 (Length: 225)
Name: NF4888-Insertion-2
Description: NF4888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4888-Insertion-2 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 6461850 - 6461633
Alignment:
| Q |
8 |
ctaagtaagaaacctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatcttttgtggtcatttttgatgaatc |
107 |
Q |
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| T |
6461850 |
ctaagtaagaaacctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatcttttgtggttatttttgatgaatc |
6461751 |
T |
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| Q |
108 |
tagaccctcaacatcttttaaaagtgatgaaacgatttcatcacgagattctttcttcacaccattcgttgaaagccatgtaacatcaacaggatcagtt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6461750 |
tagaccctcaacatcttttaaaagtgatgaaacgatttcatcacgagattctttcttcacaccattcgttgaaagccatgtaacatcaacaggatcagtt |
6461651 |
T |
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| Q |
208 |
tccaaaagccatgaatca |
225 |
Q |
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|||||||||||||||||| |
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| T |
6461650 |
tccaaaagccatgaatca |
6461633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 6496822 - 6497039
Alignment:
| Q |
8 |
ctaagtaagaaacctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatcttttgtggtcatttttgatgaatc |
107 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || ||||| ||||||| |
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| T |
6496822 |
ctaagtatgaaacctcttcggctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatccttcgttgttattttcaatgaatc |
6496921 |
T |
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| Q |
108 |
tagaccctcaacatcttttaaaagtgatgaaacgatttcatcacgagattctttcttcacaccattcgttgaaagccatgtaacatcaacaggatcagtt |
207 |
Q |
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| T |
6496922 |
tagactgccaacatcttttacaagtgatgaaacgatttcatcacgagattctttcttcacaccattggttgaaagccatgtaacataaacaggatcagtt |
6497021 |
T |
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| Q |
208 |
tccaaaagccatgaatca |
225 |
Q |
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|||||||||||||||||| |
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| T |
6497022 |
tccaaaagccatgaatca |
6497039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 6473061 - 6472855
Alignment:
| Q |
19 |
acctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatcttttgtggtcatttttgatgaatctagaccctcaa |
118 |
Q |
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|||||||| ||||||||||| |||||||| |||||| | |||||||| |||||| ||||||| | ||| || || |||||| | ||||| ||||| |
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| T |
6473061 |
acctcttcggctatcaatgctaacctcgcagcccttgctatcaattttccataaaagtaagatgatgctgttgttatcggtgatgactttagactctcaa |
6472962 |
T |
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| Q |
119 |
catcttttaaaagtgatgaaacgatttcatcacgagattctttcttcacaccattcgttgaaagccatgtaacatcaacaggatcagtttccaaaagcca |
218 |
Q |
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| T |
6472961 |
catcttttgaaagagctgaaacaatttcgtcatgtgattcttcttttacacctttgcttgaatgccaagtaatagaaacaggatctgttttcaaaagcca |
6472862 |
T |
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| Q |
219 |
tgaatca |
225 |
Q |
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||||||| |
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| T |
6472861 |
tgaatca |
6472855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 6520587 - 6520379
Alignment:
| Q |
17 |
aaacctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatcttttgtggtcatttttgatgaatctagaccctc |
116 |
Q |
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|||||||||||||||| | ||| ||||| || || || ||||||| || |||||||| ||||| | |||| | || | |||||||| |||| |||| |
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| T |
6520587 |
aaacctcttcagctattattgctaaccttgcagctctagcaatcaactttccataagaataagacgatgttgttgatatatctgatgaatttagatcctc |
6520488 |
T |
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| Q |
117 |
aacatcttttaaaagtgatgaaacgatttcatcacgagattctttcttcacaccattcgttgaaagccatgtaacatcaacaggatcagtttccaaaagc |
216 |
Q |
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||||||||| ||||||| |||||| ||||| | | | |||||||||| |||||||| | ||| |||| || ||| |||||||||||||| ||||| | |
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| T |
6520487 |
aacatctttcaaaagtgctgaaacaatttctttatggtattctttcttaacaccatttgaagaatgccaagttacagaaacaggatcagttttcaaaaac |
6520388 |
T |
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| Q |
217 |
catgaatca |
225 |
Q |
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||||||||| |
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| T |
6520387 |
catgaatca |
6520379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 6526530 - 6526665
Alignment:
| Q |
17 |
aaacctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatcttttgtggtcatttttgatgaatctagaccctc |
116 |
Q |
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|||||||||| ||||||||||||| || || || ||| |||||||||| |||||| | ||||| |||||| | ||| ||||||||| || || || |
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| T |
6526530 |
aaacctcttccgctatcaatgcaagtcttgcagctcttgcaatcaattttccataaaaataagatgattttgtttttattgttgatgaattcagtccttc |
6526629 |
T |
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| Q |
117 |
aacatcttttaaaagtgatgaaacgatttcatcacg |
152 |
Q |
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|||||| || |||||| |||||| ||||||||||| |
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| T |
6526630 |
aacatccttacaaagtgctgaaacaatttcatcacg |
6526665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 6516039 - 6515978
Alignment:
| Q |
99 |
tgatgaatctagaccctcaacatcttttaaaagtgatgaaacgatttcatcacgagattctt |
160 |
Q |
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| T |
6516039 |
tgatgaatttaaaccttcaacatcttttaaaagcgacgaaacaatttcatcatgtgattctt |
6515978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 9665319 - 9665128
Alignment:
| Q |
17 |
aaacctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatcttttgtggtcatttttgatgaatctagaccctc |
116 |
Q |
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|
|||| ||||||||||||||||||| ||| || || ||| |||||||||| |||||| |||| ||| | |||| || ||| ||||||| ||||||||| |
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| T |
9665319 |
aaacgtcttcagctatcaatgcaagcctagctgctcttgcaatcaattttccataaaagtatgaagatgttgttgttattaaagatgaatttagaccctc |
9665220 |
T |
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| Q |
117 |
aacatcttttaaaagtgatgaaacgatttcatcacgagattctttcttcacaccattcgttgaaagccatgtaacatcaacaggatcagttt |
208 |
Q |
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|||||| | ||||| |||||||||||||| | | | ||||| |||||| ||||| || || |||||||| ||| ||| |||||||||| |
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| T |
9665219 |
aacatcactcaaaagcgatgaaacgatttctttatggtgttcttccttcacgccatttgtagatagccatgttacagaaaccggatcagttt |
9665128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 208
Target Start/End: Complemental strand, 13536343 - 13536152
Alignment:
| Q |
17 |
aaacctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataagagtaagaatcttttgtggtcatttttgatgaatctagaccctc |
116 |
Q |
| |
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|||| ||||||||||||||||||| ||| || || ||| |||||||||| |||||| |||| ||| | |||| || ||| ||||||| ||||||||| |
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| T |
13536343 |
aaacgtcttcagctatcaatgcaagcctagctgctcttgcaatcaattttccataaaagtatgaagatgttgttgttattaaagatgaatttagaccctc |
13536244 |
T |
|
| Q |
117 |
aacatcttttaaaagtgatgaaacgatttcatcacgagattctttcttcacaccattcgttgaaagccatgtaacatcaacaggatcagttt |
208 |
Q |
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|||||| | ||||| |||||||||||||| | | | ||||| |||||| ||||| || || |||||||| ||| ||| |||||||||| |
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| T |
13536243 |
aacatcactcaaaagcgatgaaacgatttctttatggtgttcttccttcacgccatttgtagatagccatgttacagaaaccggatcagttt |
13536152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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