View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4888_high_1 (Length: 242)

Name: NF4888_high_1
Description: NF4888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4888_high_1
NF4888_high_1
[»] chr4 (7 HSPs)
chr4 (1-223)||(48170411-48170633)
chr4 (9-143)||(48852756-48852890)
chr4 (8-157)||(48147567-48147716)
chr4 (99-217)||(48891428-48891546)
chr4 (82-150)||(45371999-45372067)
chr4 (9-150)||(49044044-49044185)
chr4 (82-150)||(49048503-49048571)
[»] chr6 (1 HSPs)
chr6 (9-143)||(21015899-21016033)
[»] chr8 (2 HSPs)
chr8 (9-95)||(4031758-4031844)
chr8 (123-215)||(15348874-15348966)
[»] chr3 (1 HSPs)
chr3 (12-104)||(47451758-47451850)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 48170411 - 48170633
Alignment:
Q  1 ttcttcactaaatcatgatgataagctaaccaatgaataaccccgttaaaaagtgaccctactctgggatcatcatagtcattcatataagggaagcgag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48170411 ttcttcactaaatcatgatgataagctaaccaatgaataaccccgttaaaaagtgaccctactctgggatcatcatagtcattcatataagggaagcgag 48170510  T
Q  101 taccctctagtactttccaggtattatctcttaatgagaaaaattccaaacgcgaataacaataaactaaggttggatcacaggacactgaaaccactga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |    
T  48170511 taccctctagtactttccaggtattatctcttaatgagaaaaattccaaacgcgaataacaatgaactaaggttggatcacaggacactgaaaccactaa 48170610  T
Q  201 gtaatcatctcttaactgatcat 223  Q
    |||||||||||||||||||||||    
T  48170611 gtaatcatctcttaactgatcat 48170633  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 48852890 - 48852756
Alignment:
Q  9 taaatcatgatgataagctaaccaatgaataaccccgttaaaaagtgaccctactctgggatcatcatagtcattcatataagggaagcgagtaccctct 108  Q
    |||||||||| || |||| |||||||||||| |||| |||||||| ||||||||||||||||||||  || ||||||| ||||||||| ||||||||||     
T  48852890 taaatcatgacgaaaagccaaccaatgaatagccccattaaaaagcgaccctactctgggatcatcggaggcattcatgtaagggaagtgagtaccctca 48852791  T
Q  109 agtactttccaggtattatctcttaatgagaaaaa 143  Q
    | | ||||||| | |||| |||| |||||||||||    
T  48852790 atttctttccatgcattagctctcaatgagaaaaa 48852756  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 48147567 - 48147716
Alignment:
Q  8 ctaaatcatgatgataagctaaccaatgaataaccccgttaaaaagtgaccctactctgggatcatcatagtcattcatataagggaagcgagtaccctc 107  Q
    |||||||||  ||| |||| |||||||||||| ||||  |||||||||||||||||||  | ||||||  || |  ||||||||||||  ||||||||||    
T  48147567 ctaaatcattgtgaaaagccaaccaatgaatagccccactaaaaagtgaccctactctatgctcatcagggtaaagcatataagggaacggagtaccctc 48147666  T
Q  108 tagtactttccaggtattatctcttaatgagaaaaattccaaacgcgaat 157  Q
     ||| |||||||  || ||||||| || |||||||| ||||| |||||||    
T  48147667 aagttctttccacatactatctctcaacgagaaaaactccaatcgcgaat 48147716  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 48891546 - 48891428
Alignment:
Q  99 agtaccctctagtactttccaggtattatctcttaatgagaaaaattccaaacgcgaataacaataaactaaggttggatcacaggacactgaaaccact 198  Q
    ||||||||| | | |||||||  |||||||||| ||||||||||| |||||||||| || |  |  | ||||||||| |||| ||||||||||||||||     
T  48891546 agtaccctcaatttctttccacatattatctctcaatgagaaaaactccaaacgcggatgattaccatctaaggttgtatcataggacactgaaaccacc 48891447  T
Q  199 gagtaatcatctcttaact 217  Q
     | ||||||||||||||||    
T  48891446 aactaatcatctcttaact 48891428  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 45371999 - 45372067
Alignment:
Q  82 ttcatataagggaagcgagtaccctctagtactttccaggtattatctcttaatgagaaaaattccaaa 150  Q
    |||| |||||||||| |||||||||| ||| || |||| ||||||||||| ||||||||||| ||||||    
T  45371999 ttcaaataagggaagtgagtaccctcaagttctctccaagtattatctctcaatgagaaaaactccaaa 45372067  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 49044044 - 49044185
Alignment:
Q  9 taaatcatgatgataagctaaccaatgaataaccccgttaaaaagtgaccctactctgggatcatcatagtcattcatataagggaagcgagtaccctct 108  Q
    ||||||| ||||| |||| ||||| |||||| |||| ||||| || ||||||||  ||| || |||| ||   || ||||||||||||  |||| ||||     
T  49044044 taaatcaagatgaaaagccaaccagtgaatagccccattaaagagcgaccctaccatggaataatcagagaagtttatataagggaagttagtaacctca 49044143  T
Q  109 agtactttccaggtattatctcttaatgagaaaaattccaaa 150  Q
    | | | |||||  |||||||||| ||||||||||| ||||||    
T  49044144 atttcattccatctattatctctcaatgagaaaaactccaaa 49044185  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 49048503 - 49048571
Alignment:
Q  82 ttcatataagggaagcgagtaccctctagtactttccaggtattatctcttaatgagaaaaattccaaa 150  Q
    ||||||||||||| | |||||||||| | | |||||||  |||||||||| || |||||||| ||||||    
T  49048503 ttcatataagggatgtgagtaccctcaatttctttccatatattatctctcaacgagaaaaactccaaa 49048571  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 21016033 - 21015899
Alignment:
Q  9 taaatcatgatgataagctaaccaatgaataaccccgttaaaaagtgaccctactctgggatcatcatagtcattcatataagggaagcgagtaccctct 108  Q
    |||||||||| || |||| |||||||||||| |||| |||||||  ||||||||  ||| || |||| ||  |||||| ||||||||| ||||||||||     
T  21016033 taaatcatgacgaaaagccaaccaatgaatagccccattaaaaaccgaccctaccatggaataatcagaggtattcatgtaagggaagggagtaccctca 21015934  T
Q  109 agtactttccaggtattatctcttaatgagaaaaa 143  Q
    | | |||||||  |||||||||| || ||||||||    
T  21015933 atttctttccacctattatctctcaacgagaaaaa 21015899  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 9 - 95
Target Start/End: Original strand, 4031758 - 4031844
Alignment:
Q  9 taaatcatgatgataagctaaccaatgaataaccccgttaaaaagtgaccctactctgggatcatcatagtcattcatataagggaa 95  Q
    |||||||||| || |||| ||||||||||||   ||  ||||||| ||||||||||||||||||| | || |||| |||||||||||    
T  4031758 taaatcatgacgaaaagccaaccaatgaatagatccactaaaaagcgaccctactctgggatcatgagaggcatttatataagggaa 4031844  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 215
Target Start/End: Complemental strand, 15348966 - 15348874
Alignment:
Q  123 attatctcttaatgagaaaaattccaaacgcgaataacaataaactaaggttggatcacaggacactgaaaccactgagtaatcatctcttaa 215  Q
    ||||||||| || |||||||| ||||||| |||||||  || | ||||||  |||||| |||||| | |||||||  ||||||||||| ||||    
T  15348966 attatctctcaacgagaaaaactccaaacacgaataaatattatctaaggcgggatcataggacattaaaaccaccaagtaatcatcttttaa 15348874  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 47451758 - 47451850
Alignment:
Q  12 atcatgatgataagctaaccaatgaataaccccgttaaaaagtgaccctactctgggatcatcatagtcattcatataagggaagcgagtacc 104  Q
    ||||||| || |||| ||||||| |||| |||| || || ||  |||||||||| ||||||||| |   |||||||||||||||| |||||||    
T  47451758 atcatgacgaaaagccaaccaataaatagccccattgaagagccaccctactctaggatcatcacatgaattcatataagggaagtgagtacc 47451850  T

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