View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4888_low_1 (Length: 706)
Name: NF4888_low_1
Description: NF4888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4888_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 41 - 657
Target Start/End: Original strand, 14176609 - 14177231
Alignment:
| Q |
41 |
ccagtagttgaagatggtgatgatgaagatgttcaggatggagagcaatccccaacatctcagctcaggagatcaagcagagatcatcat------acca |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
14176609 |
ccagtagttgaagatggtgatgatgaagatgttcaagatggagagcaatccacaacatctcatctcaggagatcaagcagagatcatcatccatctacca |
14176708 |
T |
|
| Q |
135 |
ggtaccctagttcggagtacatcctcatcactgatgagggggagccggaaagtttcgatgaagttcaaactcataaggataaaatccaatggatgaaagc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14176709 |
ggtaccctagttcggagtacatcctcatcactgatgagggggagccggaaagtttcgatgaagttcaaactcataaggataaaatccaatggatgaaagc |
14176808 |
T |
|
| Q |
235 |
aatgcaagaagagatggattcattgcagaaaaatgatacttatgaacttgtgaaacttcctgaaggcagaaaagccttgaaaaataaatgggtgttcaag |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14176809 |
aatgcaagaagagatggattcattgcagaaaaatgatacttatgaacttgtgaaacttcctgaaggcagaaaagccttgaagaataaatgggtgttcaag |
14176908 |
T |
|
| Q |
335 |
ctcaagaaagatggtgacaagctagtgaagtacaaagctcgcttagtcgtaaaaggttttggacaaaagcgaggaatagattttgatgaaatcttctctt |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14176909 |
ctcaagaaagatggtgacaagctagtgaagtacaaagctcgcttagtcgtaaaaggttttggacaaaagcgaggaatagattttgatgaaatcttctctc |
14177008 |
T |
|
| Q |
435 |
cagttgttaagatgagttcaattcgagttatacttggattggttgctagcttggatttggagcttgaacaaatggacgtaaagactgcatttcttcatgg |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14177009 |
cagttgttaagatgagttcaattcgagttatactcggattagttgctagcttggatttggagcttgaacaaatggatgtaaagactgcatttcttcatgg |
14177108 |
T |
|
| Q |
535 |
agatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgtgcaaattgaataagagtctttatggatt |
633 |
Q |
| |
|
|||||| || || ||||| || |||| |||||||||||||||| || || || ||||| | ||| |||| ||||||||||| ||||| | |||||||| |
|
|
| T |
14177109 |
agatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggtttgcaaattgaagaagagcttgtatggatt |
14177207 |
T |
|
| Q |
634 |
gaagcaggcaccaaggcagtggta |
657 |
Q |
| |
|
|| || |||||||| || ||||| |
|
|
| T |
14177208 |
aaaacaagcaccaagacaatggta |
14177231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 41 - 680
Target Start/End: Complemental strand, 28609267 - 28608621
Alignment:
| Q |
41 |
ccagtagttgaagatggtgatgatgaagatgttcaggatggagagcaatccccaacatctcagctcaggagatcaagcagagatcatcat------acca |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||| |||||||||||||||| |||| |
|
|
| T |
28609267 |
ccagtagttgaagatggtgatgatgaagatgttcaagatggagagcaatccacaacatctcatctcaggagattaagcagagatcatcatccatctacca |
28609168 |
T |
|
| Q |
135 |
ggtaccctagttcggagtacatcctcatcactgatgagggggagccggaaagtttcgatgaagttcaaactcataaggataaaatccaatggatgaaagc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28609167 |
ggtaccctagttcggagtacatcctcatcactgatgagggggagccggaaagtttcgatgaagttcaaactcataaggataaaatccaatggatgaaagc |
28609068 |
T |
|
| Q |
235 |
aatgcaagaagagatggattcattgcagaaaaa-tgatacttatgaacttgtgaaacttcctgaaggcagaaaagccttgaaaaataaatgggtgttcaa |
333 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
28609067 |
aatgcaagaagagatggattcattgcagaaaaaatgatacttatgaacttgtgaaacttcctgaaggcagaaaagccttgaagaataaatgggtgttcaa |
28608968 |
T |
|
| Q |
334 |
gctcaagaaagatggtgacaagctagtgaagtacaaagctcgcttagtcgtaaaaggttttggacaaaagcgaggaatagattttgatgaaatcttctct |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608967 |
gctcaagaaagatggtgacaagctagtgaagtacaaagctcgcttagtcgtaaaaggttttggacaaaagcgaggaatagattttgatgaaatcttctct |
28608868 |
T |
|
| Q |
434 |
tcagttgttaagatgagttcaattcgagttatacttggattggttgctagcttggatttggagcttgaacaaatggacgtaaagactgcatttcttcatg |
533 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28608867 |
ccagttgttaagatgagttcaattcgagttatactcggattagttgctagcttggatttggagcttgaacaaatggatgtaaagactgcatttcttcatg |
28608768 |
T |
|
| Q |
534 |
gagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgtgcaaattgaataagagtctttatggat |
632 |
Q |
| |
|
||||||| || || ||||| || |||| ||||||||||||||| ||| || || ||||| | ||| |||| ||||||||||| ||||| | ||||||| |
|
|
| T |
28608767 |
gagatttagatgaagagatctacatggttcaaccagaaggattt-aagaagactcgaaaggagcacttggtttgcaaattgaagaagagcttgtatggat |
28608669 |
T |
|
| Q |
633 |
tgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga |
680 |
Q |
| |
|
| || || |||||||| || ||||| | ||| ||||| || ||||||| |
|
|
| T |
28608668 |
taaaacaagcaccaagacaatggtataagaaatttgactcgttcatga |
28608621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 520 - 568
Target Start/End: Original strand, 20706187 - 20706234
Alignment:
| Q |
520 |
tgcatttcttcatggagatttggaagaggagatttatatggagcaacca |
568 |
Q |
| |
|
||||||||| ||||||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
20706187 |
tgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca |
20706234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 41 - 680
Target Start/End: Original strand, 12933339 - 12933984
Alignment:
| Q |
41 |
ccagtagttgaagatggtgatgatgaagatgttcaggatggagagcaatccccaacatctcagctcaggagatcaagcagagatcatcat------acca |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
12933339 |
ccagtagttgaagatggtgatgatgaagatgttcaagatggagagcaatccacaacatctcatctcaggagatcaagcagagatcatcatccatctacca |
12933438 |
T |
|
| Q |
135 |
ggtaccctagttcggagtacatcctcatcactgatgagggggagccggaaagtttcgatgaagttcaaactcataaggataaaatccaatggatgaaagc |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12933439 |
ggtaccctagttcggagtacatcctcatcactgatgagggggagccggacagtttcgatgaagttcaaactcataaagataaaatccaatggatgaaagc |
12933538 |
T |
|
| Q |
235 |
aatgcaagaagagatggattcattgcagaaaaatgatacttatgaacttgtgaaacttcctgaaggcagaaaagccttgaaaaataaatgggtgttcaag |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12933539 |
aatgcaagaagagatggattcattgcagaaaaatgatacttatgaacttgtgaaacttcctgaaggcagaaaagccttgaagaataaatgggtgttcaag |
12933638 |
T |
|
| Q |
335 |
ctcaagaaagatggtgacaagctagtgaagtacaaagctcgcttagtcgtaaaaggttttggacaaaagcgaggaatagattttgatgaaatcttctctt |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12933639 |
ctcaagaaagatggtgacaagctagtgaagtacaaagctcgcttagtcgtaaaaggttttggacaaaagcgaggaatagattttgatgaaatcttctctc |
12933738 |
T |
|
| Q |
435 |
cagttgttaagatgagttcaattcgagttatacttggattggttgctagcttggatttggagcttgaacaaatggacgtaaagactgcatttcttcatgg |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
12933739 |
cagttgttaagatgagttcaattcgagttatactcggattggttgctagcttggatttggagcttgaacaaatggatgtaaagactgcatttcttcatgg |
12933838 |
T |
|
| Q |
535 |
agatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgtgcaaattgaataagagtctttatggatt |
633 |
Q |
| |
|
|||||| || || ||||| || |||| |||||||||||||||| || || || ||||| | ||| |||| ||||||||||| ||||| | |||||||| |
|
|
| T |
12933839 |
agatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggtttgcaaattgaagaagagcttgtatggatt |
12933937 |
T |
|
| Q |
634 |
gaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga |
680 |
Q |
| |
|
|| || |||||||| || ||||| | ||| ||||| || ||||||| |
|
|
| T |
12933938 |
aaaacaagcaccaagacaatggtataagaaatttgactcgttcatga |
12933984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 500 - 546
Target Start/End: Original strand, 28893839 - 28893885
Alignment:
| Q |
500 |
gaacaaatggacgtaaagactgcatttcttcatggagatttggaaga |
546 |
Q |
| |
|
||||||||||| || |||||||||||||| |||||||| |||||||| |
|
|
| T |
28893839 |
gaacaaatggatgtgaagactgcatttctacatggagagttggaaga |
28893885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 530 - 567
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
| Q |
530 |
catggagatttggaagaggagatttatatggagcaacc |
567 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
36999937 |
catggtgacttggaagaggagatttatatggagcaacc |
36999974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 494 - 546
Target Start/End: Original strand, 25682976 - 25683028
Alignment:
| Q |
494 |
gagcttgaacaaatggacgtaaagactgcatttcttcatggagatttggaaga |
546 |
Q |
| |
|
||||| ||||||||||| || ||||| |||||||| |||||||| |||||||| |
|
|
| T |
25682976 |
gagctagaacaaatggatgtgaagaccgcatttctacatggagagttggaaga |
25683028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 43 - 579
Target Start/End: Original strand, 15299131 - 15299669
Alignment:
| Q |
43 |
agtagttgaagatggtgatgatgaagatgttcaggatggagagcaatccccaacatctcagctcaggagatcaagcagagatcatcat------accagg |
136 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
15299131 |
agtagttgaagatggtgatgaggaagatgttcaggatggagagcaatgcccaacatctcagctcaagagatcaagcagagatcatcatccatctaccagg |
15299230 |
T |
|
| Q |
137 |
taccctagttcggagtacatcctcatcactgatgagggggagccggaaagtttcgatgaagttcaaactcataaggataaaatccaatggatgaaagcaa |
236 |
Q |
| |
|
|||||||||| ||||||||| |||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15299231 |
taccctagtttggagtacattctcatcactgttgagggggagccgaaaagttttgatgaagttcaaactcataaggataaaatccaatggatgaaagcaa |
15299330 |
T |
|
| Q |
237 |
tgcaagaagagatggattcattgcagaaaaatgatacttatgaacttgtgaaacttcctgaaggcagaaaagccttgaaaaataaatgggtgttcaagct |
336 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||| || |||||||||||||||||||| |
|
|
| T |
15299331 |
tgtaagaagagatggattccttgcagaaaaatgatacttatgaacttgtgaagcttcctgaaatcagaaaagccttaaagaataaatgggtgttcaagct |
15299430 |
T |
|
| Q |
337 |
caagaaagatggtgacaagctagtgaagtacaaagctcgcttagtcgtaaaaggttttggacaaaagcgaggaatagattttgatgaaatct--tctctt |
434 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15299431 |
caagaaagatagtgacaagctagtgaaatacaaagctctcttagtcgtaaaaggttttggacaaaagcgaggaatagattttgatgaaatcttctctctc |
15299530 |
T |
|
| Q |
435 |
cagttgttaagatgagttcaattcgagttatacttggattggttgctagcttggatttggagcttgaacaaatggacgtaaagactgcatttcttcatgg |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15299531 |
cagttgttaagatgagttcaattcgagttatactcggattggttgctagcttgggtttggagcttgaacaaatggacgtaaagac------tcttcatgg |
15299624 |
T |
|
| Q |
535 |
agatttggaagaggagatttatatggagcaaccagaaggatttga |
579 |
Q |
| |
|
| |||| || || ||||| || |||| ||||||||||||||||| |
|
|
| T |
15299625 |
atatttagatgaagagatctacatggttcaaccagaaggatttga |
15299669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 497 - 577
Target Start/End: Original strand, 828650 - 828730
Alignment:
| Q |
497 |
cttgaacaaatggacgtaaagactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggattt |
577 |
Q |
| |
|
|||||||| |||| ||||||||||| |||||||||||||| | ||||| || ||||||||| ||||| ||||||||| |
|
|
| T |
828650 |
cttgaacagctggatgtaaagactgcttttcttcatggagaacttgaagaagaaatttatatgctccaaccggaaggattt |
828730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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