View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4888_low_2 (Length: 702)

Name: NF4888_low_2
Description: NF4888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4888_low_2
NF4888_low_2
[»] chr2 (8 HSPs)
chr2 (170-695)||(43412682-43413210)
chr2 (17-67)||(43413284-43413334)
chr2 (99-156)||(43399272-43399329)
chr2 (508-590)||(929010-929092)
chr2 (26-65)||(43399370-43399409)
chr2 (452-574)||(34504177-34504300)
chr2 (92-126)||(43413220-43413254)
chr2 (450-498)||(22651102-22651150)
[»] chr7 (5 HSPs)
chr7 (508-590)||(32854239-32854321)
chr7 (511-574)||(48723328-48723391)
chr7 (508-572)||(29724368-29724432)
chr7 (452-565)||(42121329-42121442)
chr7 (508-590)||(33645263-33645349)
[»] chr3 (8 HSPs)
chr3 (452-575)||(48855510-48855633)
chr3 (452-591)||(53683921-53684061)
chr3 (508-574)||(54362031-54362097)
chr3 (452-571)||(37311647-37311766)
chr3 (521-573)||(32737826-32737878)
chr3 (451-494)||(53436172-53436215)
chr3 (508-550)||(34408058-34408100)
chr3 (508-568)||(43271651-43271711)
[»] chr5 (5 HSPs)
chr5 (453-566)||(141319-141432)
chr5 (508-572)||(6818578-6818642)
chr5 (452-498)||(12289080-12289126)
chr5 (508-574)||(29429610-29429676)
chr5 (520-594)||(6809624-6809698)
[»] chr1 (2 HSPs)
chr1 (510-593)||(31820642-31820724)
chr1 (508-573)||(3150653-3150718)
[»] chr4 (4 HSPs)
chr4 (452-590)||(3527864-3528003)
chr4 (508-574)||(50685593-50685659)
chr4 (452-573)||(8488651-8488772)
chr4 (508-593)||(13901996-13902080)
[»] chr6 (2 HSPs)
chr6 (509-574)||(7509734-7509799)
chr6 (452-498)||(5456575-5456621)
[»] chr8 (1 HSPs)
chr8 (517-571)||(12883128-12883182)


Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 170 - 695
Target Start/End: Complemental strand, 43413210 - 43412682
Alignment:
Q  170 atgaaacataaacattacttaaaacacgtagtgcatgcaatatccaacatgtatgatgattgaagttagaaattgatgtacggagtgttattttacacgt 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43413210 atgaaacataaacattacttaaaacacgtagtgcatgcaatatccaacatgtatgatgattgaagttagaaattgatgtacggagtgttattttacacgt 43413111  T
Q  270 gtaaccgtcaatttataaggtgaatctttaaaattagtttctaaaatatcttcataaaagggatagcaaacaatttacttctcaacttag-cccctcaca 368  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  43413110 gtaaccgtcaatttataaggcgactctttaaaattagtttctaaaatatcttcataaaagggatagcaaccaatttacttctcaacttagccccctcaca 43413011  T
Q  369 aggagagatttactataataatcaaatataaaaggggttttgctaacttatgttttaagccatatattaaacaatctaaaaataaaagtagaaatattct 468  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||    
T  43413010 aggagagatttactataataatcaaatataaaa-gggtcttgctaacttatgttttaaggcatatgttaaacaatctaaaaataaaagtagaaacattct 43412912  T
Q  469 cttaaattttgtgtattaagttaatcaaaatgnnnnnnnttaaattctaatgcattga---ttagaacaaattatttccacttttaactaattaacttgt 565  Q
    ||||||||||||||||||| ||||||||||||       ||||||||||||| |||||   || || |||||||||||||||||||||||||||||||||    
T  43412911 cttaaattttgtgtattaaattaatcaaaatgaaaaaaattaaattctaatgtattgattttttgagcaaattatttccacttttaactaattaacttgt 43412812  T
Q  566 gccttaaggatacacgttagcattttccaatacaaaataatattttctcgcttatatattcgctcgcatatgtgaggaacactagatttggttttccccc 665  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43412811 gccttaagggcacacgttagcattttccaatacaaaataatattttctcacttatatattcgctcgcatatgtgaggaacactagatttggttttccccc 43412712  T
Q  666 attctaagttgctctaacatagtataatct 695  Q
    ||||||||||||||||||||||||||||||    
T  43412711 attctaagttgctctaacatagtataatct 43412682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 43413334 - 43413284
Alignment:
Q  17 agtatcagtattcattctagttctagaattgattaaaagaaaaatatatag 67  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43413334 agtattagtattcattctagttctagaattgattaaaagaaaaatatatag 43413284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 43399329 - 43399272
Alignment:
Q  99 atggaatcaacaacattctcaactttttattactagtaaattcttcgagccataaacc 156  Q
    ||||||||||||||||||||||||||| ||||||||||| ||| || |||||||||||    
T  43399329 atggaatcaacaacattctcaacttttcattactagtaagttcctccagccataaacc 43399272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 508 - 590
Target Start/End: Complemental strand, 929092 - 929010
Alignment:
Q  508 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaaggatacacgttagcattt 590  Q
    |||||||| ||||||||||||| |||||| |||||| |||||| |||  |||||||||| |||||||| ||| |||| |||||    
T  929092 ttaaattcaaatgcattgattacaacaaaatatttctacttttgactctttaacttgtgtcttaaggacacaagttaacattt 929010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 43399409 - 43399370
Alignment:
Q  26 attcattctagttctagaattgattaaaagaaaaatatat 65  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  43399409 attcattctggttctagaattgatgaaaagaaaaatatat 43399370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 452 - 574
Target Start/End: Complemental strand, 34504300 - 34504177
Alignment:
Q  452 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaa-tgnnnnnnnttaaattctaatgcattgattagaacaaattatttccactttt 550  Q
    ||||||| |||||||||||||||||||||| ||| | ||||| |||| |         ||||||| ||||||||||||  ||||| ||||||| ||||||    
T  34504300 aaaagtaaaaatattctcttaaattttgtgcattcaattaattaaaagtaaaaaaaactaaattcaaatgcattgattgcaacaacttatttctactttt 34504201  T
Q  551 aactaattaacttgtgccttaagg 574  Q
     | | ||||||||||| |||||||    
T  34504200 gattcattaacttgtgtcttaagg 34504177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 92 - 126
Target Start/End: Complemental strand, 43413254 - 43413220
Alignment:
Q  92 atcatgaatggaatcaacaacattctcaacttttt 126  Q
    |||||| ||||||||||||||||||||||||||||    
T  43413254 atcatggatggaatcaacaacattctcaacttttt 43413220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 450 - 498
Target Start/End: Original strand, 22651102 - 22651150
Alignment:
Q  450 ataaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaa 498  Q
    |||||| |||||||||||||||||||||| || ||| | ||||||||||    
T  22651102 ataaaaatagaaatattctcttaaattttatgcattcaattaatcaaaa 22651150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 508 - 590
Target Start/End: Complemental strand, 32854321 - 32854239
Alignment:
Q  508 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaaggatacacgttagcattt 590  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||  ||| ||||||||||    
T  32854321 ttaatttcaaatgcattgattagaacaaattatttccacttttaactcattaacttgtgttttaagggcacaggttagcattt 32854239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 511 - 574
Target Start/End: Original strand, 48723328 - 48723391
Alignment:
Q  511 aattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaagg 574  Q
    ||||| |||||||| |||| |||||| |||||||||||| |||| |||||||||||||||||||    
T  48723328 aattcaaatgcattcattacaacaaaatatttccactttaaactcattaacttgtgccttaagg 48723391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 508 - 572
Target Start/End: Original strand, 29724368 - 29724432
Alignment:
Q  508 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaa 572  Q
    |||||||| |||||||| |||| ||||||||||||| |||||| ||| ||| |||||| ||||||    
T  29724368 ttaaattcaaatgcatttattacaacaaattatttctacttttgacttatttacttgtaccttaa 29724432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 452 - 565
Target Start/End: Complemental strand, 42121442 - 42121329
Alignment:
Q  452 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaatgnnnnnnnttaaattctaatgcattgattagaacaaattatttccactttta 551  Q
    ||||||||||| |||||||||||||||||  ||| | ||||| ||||         |||||||| |||||||| |||| ||||||||||||  | |||||    
T  42121442 aaaagtagaaacattctcttaaattttgtacattcaattaatgaaaagtgaaaaaattaaattcaaatgcattaattacaacaaattatttatattttta 42121343  T
Q  552 actaattaacttgt 565  Q
    ||| ||||||||||    
T  42121342 actcattaacttgt 42121329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 508 - 590
Target Start/End: Original strand, 33645263 - 33645349
Alignment:
Q  508 ttaaattctaatgcattgattagaacaaattatttccacttttaact-----aattaacttgtgccttaaggatacacgttagcattt 590  Q
    |||||||| ||||||||| ||| |||||||||||||||||||| |||      |||||||||||||||||||  ||| ||||||||||    
T  33645263 ttaaattcaaatgcattg-ttacaacaaattatttccacttttgactcattacattaacttgtgccttaagggcacaagttagcattt 33645349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 452 - 575
Target Start/End: Original strand, 48855510 - 48855633
Alignment:
Q  452 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaatgnnnnnnnttaaattctaatgcattgattagaacaaattatttccactttta 551  Q
    |||||||||||||||||||| ||||||||||||| | |||||| |||         |||||||| |||| ||| |||| ||||| |||||||||||||||    
T  48855510 aaaagtagaaatattctcttgaattttgtgtattcaattaatctaaaattaaagaattaaattcaaatgaattaattacaacaatttatttccactttta 48855609  T
Q  552 actaattaacttgtgccttaagga 575  Q
     || ||||||||||||||||||||    
T  48855610 gctcattaacttgtgccttaagga 48855633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 452 - 591
Target Start/End: Complemental strand, 53684061 - 53683921
Alignment:
Q  452 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaatgnnnnnnn-ttaaattctaatgcattgattagaacaaattatttccactttt 550  Q
    ||||||||||||||||||||| |||||||||||| | |||||||||| |        |||||||| ||| |||| |||| |||||||||||| |||||||    
T  53684061 aaaagtagaaatattctcttatattttgtgtattcaattaatcaaaaagtcaaaaaattaaattcaaatacattaattaaaacaaattattttcactttt 53683962  T
Q  551 aactaattaacttgtgccttaaggatacacgttagcatttt 591  Q
      || |||||||||||||||||||  ||| |||| ||||||    
T  53683961 ggctcattaacttgtgccttaagggcacaagttaacatttt 53683921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 508 - 574
Target Start/End: Complemental strand, 54362097 - 54362031
Alignment:
Q  508 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaagg 574  Q
    |||||||| ||||||||||||| ||| || |||||| |||||| ||| |||||||||||||||||||    
T  54362097 ttaaattcaaatgcattgattacaaccaaatatttctacttttgactcattaacttgtgccttaagg 54362031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 452 - 571
Target Start/End: Complemental strand, 37311766 - 37311647
Alignment:
Q  452 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaatgnnnnnnnttaaattctaatgcattgattagaacaaattatttccactttta 551  Q
    ||||||||||| ||||||||  |||||||| ||| | ||||||||||         |||||||| |||||||| |||| ||||||||||||  ||||||     
T  37311766 aaaagtagaaacattctcttgtattttgtgcattcaattaatcaaaagtcaaaaaattaaattcaaatgcattaattacaacaaattatttatacttttg 37311667  T
Q  552 actaattaacttgtgcctta 571  Q
     || ||||||||||||||||    
T  37311666 tctcattaacttgtgcctta 37311647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 521 - 573
Target Start/End: Original strand, 32737826 - 32737878
Alignment:
Q  521 cattgattagaacaaattatttccacttttaactaattaacttgtgccttaag 573  Q
    ||||||||| |||||||||||| || |||| ||| ||||||||||||||||||    
T  32737826 cattgattacaacaaattattttcatttttgactcattaacttgtgccttaag 32737878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 451 - 494
Target Start/End: Original strand, 53436172 - 53436215
Alignment:
Q  451 taaaagtagaaatattctcttaaattttgtgtattaagttaatc 494  Q
    |||||||||||||||| |||||||||||||||||| | ||||||    
T  53436172 taaaagtagaaatattttcttaaattttgtgtatttaattaatc 53436215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 508 - 550
Target Start/End: Complemental strand, 34408100 - 34408058
Alignment:
Q  508 ttaaattctaatgcattgattagaacaaattatttccactttt 550  Q
    |||||||  ||||||||||||| ||||||||||||||||||||    
T  34408100 ttaaatttaaatgcattgattacaacaaattatttccactttt 34408058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 508 - 568
Target Start/End: Complemental strand, 43271711 - 43271651
Alignment:
Q  508 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgcc 568  Q
    |||||||| |||||||| |||| |||| | ||||||||||||| | | |||||||||||||    
T  43271711 ttaaattcaaatgcatttattacaacagaatatttccacttttgattcattaacttgtgcc 43271651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 453 - 566
Target Start/End: Complemental strand, 141432 - 141319
Alignment:
Q  453 aaagtagaaatattctcttaaattttgtgtattaagttaatcaaaatgnnnnnnnttaaattctaatgcattgattagaacaaattatttccacttttaa 552  Q
    ||||||||||||||||||| ||||||||| ||| | ||||||||||         |||||||| |||||||| |||| ||||| |||||||||||||||     
T  141432 aaagtagaaatattctcttgaattttgtgcattcaattaatcaaaagttaaagaattaaattcaaatgcattaattacaacaatttatttccacttttag 141333  T
Q  553 ctaattaacttgtg 566  Q
    || |||||||||||    
T  141332 ctcattaacttgtg 141319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 508 - 572
Target Start/End: Complemental strand, 6818642 - 6818578
Alignment:
Q  508 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaa 572  Q
    |||||||| ||| ||||||||| |||||||||||| || |||||||| |||||||||||| ||||    
T  6818642 ttaaattcaaatacattgattacaacaaattattttcatttttaactcattaacttgtgctttaa 6818578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 452 - 498
Target Start/End: Complemental strand, 12289126 - 12289080
Alignment:
Q  452 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaa 498  Q
    |||||||||||||||||||| ||||||||||||| | ||||||||||    
T  12289126 aaaagtagaaatattctcttgaattttgtgtattcaattaatcaaaa 12289080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 508 - 574
Target Start/End: Complemental strand, 29429676 - 29429610
Alignment:
Q  508 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaagg 574  Q
    |||||||| |||| ||| |||| |||||| ||||||||||||| |||  ||||||||||||||||||    
T  29429676 ttaaattcaaatgtattaattacaacaaaatatttccacttttgactctttaacttgtgccttaagg 29429610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 594
Target Start/End: Complemental strand, 6809698 - 6809624
Alignment:
Q  520 gcattgattagaacaaattatttccacttttaactaattaacttgtgccttaaggatacacgttagcattttcca 594  Q
    ||||||||||  ||||||||||||||||||| |||  ||||||||||  |||| || ||| |||| |||||||||    
T  6809698 gcattgattacgacaaattatttccacttttgactctttaacttgtgttttaaagacacaagttaacattttcca 6809624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 510 - 593
Target Start/End: Original strand, 31820642 - 31820724
Alignment:
Q  510 aaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaaggatacacgttagcattttcc 593  Q
    |||||| ||||| ||||||| |||||||||||||||||||| ||| ||||||||| |||||||||  ||| |||| ||||||||    
T  31820642 aaattcaaatgc-ttgattacaacaaattatttccacttttgacttattaacttgcgccttaagggcacaagttaacattttcc 31820724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 508 - 573
Target Start/End: Complemental strand, 3150718 - 3150653
Alignment:
Q  508 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaag 573  Q
    |||||||| |||| ||| |||| |||||||||||||||||||| |||  |||||||||| ||||||    
T  3150718 ttaaattcaaatgtattaattacaacaaattatttccacttttgacttgttaacttgtgtcttaag 3150653  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 452 - 590
Target Start/End: Complemental strand, 3528003 - 3527864
Alignment:
Q  452 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaa-tgnnnnnnnttaaattctaatgcattgattagaacaaattatttccactttt 550  Q
    ||||||||||| ||||||||| |||||||| ||| | |||||||||| |        |||||||| ||||||||||||| |||||| |||||| |||||     
T  3528003 aaaagtagaaacattctcttatattttgtgcattcaattaatcaaaaataaaataaattaaattcaaatgcattgattacaacaaaatatttctactttg 3527904  T
Q  551 aactaattaacttgtgccttaaggatacacgttagcattt 590  Q
     ||| ||| ||||||| |||||||| ||| |||| |||||    
T  3527903 gacttattgacttgtgtcttaaggacacatgttaacattt 3527864  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 508 - 574
Target Start/End: Complemental strand, 50685659 - 50685593
Alignment:
Q  508 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaagg 574  Q
    |||||||| ||| |||| |||| ||||||||||||||||||||  || |||||||||||||||||||    
T  50685659 ttaaattcaaatacatttattacaacaaattatttccacttttggctcattaacttgtgccttaagg 50685593  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 452 - 573
Target Start/End: Original strand, 8488651 - 8488772
Alignment:
Q  452 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaatgnnnnnnnttaaattctaatgcattgattagaacaaattatttccactttta 551  Q
    ||||||||||| ||||||||  |||||||||||| | ||||||||||         |||||||| |||||||| |||| | ||||||||||||  |||||    
T  8488651 aaaagtagaaacattctcttgtattttgtgtattcaattaatcaaaagtcaaaaaattaaattcaaatgcattaattacaccaaattatttcctttttta 8488750  T
Q  552 actaattaacttgtgccttaag 573  Q
     || |||||||||||| |||||    
T  8488751 gctcattaacttgtgctttaag 8488772  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 508 - 593
Target Start/End: Complemental strand, 13902080 - 13901996
Alignment:
Q  508 ttaaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaaggatacacgttagcattttcc 593  Q
    |||||||| ||||||||||||| ||| || |||||| |||||| ||| |||| ||| |||||||| | |||| |||| ||||||||    
T  13902080 ttaaattcaaatgcattgattacaaccaaatatttctacttttgactcattacctt-tgccttaaaggtacaagttaacattttcc 13901996  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 509 - 574
Target Start/End: Original strand, 7509734 - 7509799
Alignment:
Q  509 taaattctaatgcattgattagaacaaattatttccacttttaactaattaacttgtgccttaagg 574  Q
    ||||||| ||||||||||||| |||| | |||||| |||||| ||| |||||||||||||||||||    
T  7509734 taaattcaaatgcattgattacaacacaatatttctacttttgactcattaacttgtgccttaagg 7509799  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 452 - 498
Target Start/End: Original strand, 5456575 - 5456621
Alignment:
Q  452 aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaa 498  Q
    |||| ||||||||||||||| ||||||||||||| | ||||||||||    
T  5456575 aaaaatagaaatattctcttgaattttgtgtattcaattaatcaaaa 5456621  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 517 - 571
Target Start/End: Original strand, 12883128 - 12883182
Alignment:
Q  517 aatgcattgattagaacaaattatttccacttttaactaattaacttgtgcctta 571  Q
    |||||||| |||| |||||||||||| ||||| ||||| ||||||||||||||||    
T  12883128 aatgcattaattacaacaaattattttcacttataactcattaacttgtgcctta 12883182  T

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