View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4888_low_5 (Length: 302)
Name: NF4888_low_5
Description: NF4888
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4888_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 11 - 285
Target Start/End: Complemental strand, 35431865 - 35431591
Alignment:
| Q |
11 |
cacagagtcagtgaaagttttgtgtacttgaagaagttcgtttccgatcaataaatagagtaagctacatctatcgctgagtgggggatggggaaagttg |
110 |
Q |
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| T |
35431865 |
cacagagtgagtgaaagttttgtgtacttgaagaagttcgtttccgatcaataaatagagtaagctacatctatcgctgagtgggggatgggggaagttg |
35431766 |
T |
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| Q |
111 |
ctatatgaggtgttagttcactttcactgcaagagtttggttgtactcccccctctcaatttaatactcacatttagattgtgaactaattttcaagaaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35431765 |
ctatatgaggtgttagttcactttcactgcaagagtttggttgtactcccccctctcaatttaatactcacatttagattgtgaactatttttcaagaaa |
35431666 |
T |
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| Q |
211 |
ttaccaattttatattatccttatcaattgtatttaaacaatgactataatttaaaagttgtgacattttcttat |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35431665 |
ttaccaattttatattatccttatcaattgtatttaaacaatgactataatttaaaagttgtgacattttcttat |
35431591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 285
Target Start/End: Original strand, 36204136 - 36204178
Alignment:
| Q |
243 |
tttaaacaatgactataatttaaaagttgtgacattttcttat |
285 |
Q |
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| T |
36204136 |
tttaaacaatgactatattttaaaaattgtgacatttttttat |
36204178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 285
Target Start/End: Original strand, 31181152 - 31181194
Alignment:
| Q |
243 |
tttaaacaatgactataatttaaaagttgtgacattttcttat |
285 |
Q |
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| T |
31181152 |
tttaaacaataactataagttaaaagttgtgacattttcttat |
31181194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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